General information for g10938.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Partitioning defective 3-like protein.
Parent gene
- The parent gene g10938 is located on chr_1: 12871986..12877989 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10938 | g10938.t1 | TTS | g10938.t1 | 12868280 | 12868280 |
| chr_1 | g10938 | g10938.t1 | isoform | g10938.t1 | 12868552 | 12877989 |
| chr_1 | g10938 | g10938.t1 | exon | g10938.t1.exon1 | 12868552 | 12869012 |
| chr_1 | g10938 | g10938.t1 | cds | g10938.t1.CDS1 | 12868552 | 12869012 |
| chr_1 | g10938 | g10938.t1 | exon | g10938.t1.exon2 | 12869066 | 12869377 |
| chr_1 | g10938 | g10938.t1 | cds | g10938.t1.CDS2 | 12869066 | 12869377 |
| chr_1 | g10938 | g10938.t1 | exon | g10938.t1.exon3 | 12869443 | 12869868 |
| chr_1 | g10938 | g10938.t1 | cds | g10938.t1.CDS3 | 12869443 | 12869868 |
| chr_1 | g10938 | g10938.t1 | exon | g10938.t1.exon4 | 12869925 | 12870072 |
| chr_1 | g10938 | g10938.t1 | cds | g10938.t1.CDS4 | 12869925 | 12870072 |
| chr_1 | g10938 | g10938.t1 | exon | g10938.t1.exon5 | 12871986 | 12872033 |
| chr_1 | g10938 | g10938.t1 | cds | g10938.t1.CDS5 | 12871986 | 12872033 |
| chr_1 | g10938 | g10938.t1 | exon | g10938.t1.exon6 | 12872093 | 12872465 |
| chr_1 | g10938 | g10938.t1 | cds | g10938.t1.CDS6 | 12872093 | 12872465 |
| chr_1 | g10938 | g10938.t1 | exon | g10938.t1.exon7 | 12873459 | 12874029 |
| chr_1 | g10938 | g10938.t1 | cds | g10938.t1.CDS7 | 12873459 | 12874029 |
| chr_1 | g10938 | g10938.t1 | exon | g10938.t1.exon8 | 12874095 | 12875264 |
| chr_1 | g10938 | g10938.t1 | cds | g10938.t1.CDS8 | 12874095 | 12875264 |
| chr_1 | g10938 | g10938.t1 | exon | g10938.t1.exon9 | 12875380 | 12876401 |
| chr_1 | g10938 | g10938.t1 | cds | g10938.t1.CDS9 | 12875380 | 12876401 |
| chr_1 | g10938 | g10938.t1 | exon | g10938.t1.exon10 | 12876463 | 12876663 |
| chr_1 | g10938 | g10938.t1 | cds | g10938.t1.CDS10 | 12876463 | 12876663 |
| chr_1 | g10938 | g10938.t1 | exon | g10938.t1.exon11 | 12876725 | 12877314 |
| chr_1 | g10938 | g10938.t1 | cds | g10938.t1.CDS11 | 12876725 | 12877314 |
| chr_1 | g10938 | g10938.t1 | exon | g10938.t1.exon12 | 12877729 | 12877989 |
| chr_1 | g10938 | g10938.t1 | cds | g10938.t1.CDS12 | 12877729 | 12877989 |
| chr_1 | g10938 | g10938.t1 | TSS | g10938.t1 | NA | NA |
Sequences
>g10938.t1 Gene=g10938 Length=5583
ATGTTTGATTATCAACCAAAGTGTCCGGGAATGTTAACGTCAAAATTAACGAGCATCTTT
GGATGGCGGCATACTTATAATGTGCATGATCGTCAAAAGGGTCTTAATCATTTTAAAGGC
CATGCAAATATTAATGAAAATGGTCATAATTTACAAAAATCATACTCACTAAATTTGCCA
CCAAAGAAGCATCACAAAATTACCGCATCTAATCCATCACTACCCGAAGCTTCATCATCA
TCATCAACAGCTGCAACAACGAATCCAGAGTCATGGGTTGTAGTTCATCATCTGCAATCA
CAATCGGGTATTTTAGATCCAGATGATCGAGTCAATGATGTAGCTGATGATCGTGAGCAA
ATATTAGCAAGTTTTGACGATCGAAGTCCTGATCCAGGAATACCACAAGGTGGTGGTGAT
GGTGCAAGTGGCAGTAGTGTAGGAACAGGCAGTCCCGATATTTTTCGTATTCAAGATGGA
AAATATAGCACTAGCAATCATCATCAGAATGAGAGCATTCCAACACACATTGATGTAACA
GAAAGCGATCAACCGCCAGTTGGTCTTACTTTACAAGTTCGTCGAGGCAGTGAACCATCA
CTACTTGCTTTGGATCAAAACACACAACTCTATCCAACATCAGAAAATTCACATGAACCC
TCAAAAAGATGGTCAGCCGCTCCAGTTTGTCGAGATGAACCAGAGAGATTGCTGAACGGT
GCAATGACCAATGGATCATTTTCGTCACCAAAGTGGACAGTGCCAGAAGAAGAAATTTCA
AATGAAACGATGCCATCAACTTTCACACGATCCGGACGATTATCGATGCAGTTTTTGGGA
GATGGAGCAAATTACCGTTGGATTGAAGCAGCTGAAAAAGCTGCTCATAATCTTAGTAGA
AGTGACAGTAGTCAAAACGGCAGCATTCATGCTAATAATAGCAATAACAACTCATTTAGT
TCAAAGTCACTGCCAAGAGATGCAAAGCAACGAAAAGAACCACTTGGACAAGCTAATGTG
TCATCATATGAATCAATTAGACAGAAAAATGGCGAGATGCTTCTCGTTACAAATGAGTCT
GGCGGTCAATTAGGTTTGACAGCAATTCCAGACCGTGAAAATGGTGGACTTCTTGTTCAA
TCAGTTGAACCAGATAGTCGAGCCGAAAAAGGACGTTTAAGGCGTGGCGATAGAATTCTT
GAAATTAATGGCGTGAATTTGATGGAATTGTCAGAAGCATCAGTACAGGAACAATTAAAG
AAATGTATTGCATCATCTGAATTGCGATTGCGTGTAATTAGAGCTAAATCTGAAACACGA
GATCGAAGTAAAATTGAAATGTTTGAAGCAGAAGAGAAAGCATCAGCACATAGCAAAGTT
GCTCATGTTTCACCAACTAGAAAGCCGGGTACAATTGCAACTTCATCGCTGCAAGCAGCA
AATACAAGAAAACTCGGAAGAAAGATTGAAATTACATTAAAAAAGGGCGCACATGGTTTA
GGCTTCAGTGTGACAACTCGAGATAATCCTGCTGGTGGTCATTGTCCAATTTATATCAAA
AATATTCTTCCTAAAGGTGCCGCAATTGAAGATGGACGACTAAAGCCTGGTGATAGATTA
TTAGAAGTTGATAATGTTGCAATGACTGGGAAATCACAAGCAGAAGTTGTTAATATTTTA
AGAGCAACACAACCAGGTGCTGTTGTTAAAATTGTAGTCTCACGACAACAAGAAATTCCA
GAAGTCGATGAACGAGAAATTGGTAGTGAAATCGAACAACAACAACAAAGAAGCACAACT
CTTCCTAAGCAACCACCACCTCCAATTCTTCCTAAAAATGTTCTTAAATCACCATCAGCT
CCAAATATCAATGAAATGCTCGATTCTAAGTCAAATTCAATCGATAATCTTAATGAAAAT
GTTAAAATGAAAATCAAAAAATTTAACTCGCCATCATCAAGTCTAACTCGTGATCAGAAT
GCAAATATCTTTCCATGGCGTAATCGAGAGATTCTTACTTTTCACATTCCAGTGCACGAT
TCTGAAAAGGCTGGCCTGGGCGTTAGTGTAAAAGGTAAAACTGGTTCTGCAAATCCAAAT
ACATCAATGAATACTAAGCATGACGGAGACTTAGGAATTTTTATTAAAAGTGTGTTACAT
GGAGGAGCTGCAAGCAGAGATGGTCGTTTGAAAATGAATGATCAATTACTAAGTGTTAAT
GGAATTTCATTACTGGGTCAATCAAATGCTGATGCCATGGATACATTGAGAAGAGCGATG
TTACAGACAGGTGGCAAACATCCAGGAGTTATTGTTTTAAAAATAGCAAGACGTGCTTCA
TCACGACCAAATAGCACAATTGAGAATGGTGAACAACATGTTGTTGACAGTAGTGGAAAT
ACAAGTGAACAGTCAGGATCGACGGTCATTTATTTATCGCCAAATGACAAGAATTCAGTG
AATCAACAGAAAGAGCAACAAATGAGTCCAAATACTCCACAAGAAAATGGCAAAAGATGG
AGTAATCCAGTGTTGGATCGTTTAACTGGTGGAACAGGCAATTCAAGAGTTCAATCAACG
CTCATTCAAATGCCAGGTGGTTTAAGAAATGATAGCTATTATATGGCAACAAATGAAAAT
TGGAGTCCAAATGTAAATCTTAATAACAGTAATGGTGTGTTGATTGAAGAAGATTCTGAA
CCAACTTCACCAATTCTTCCAATAAGACCTGATTTTCAACATCAAATTTCTGCTTCAACA
CCAACAAGTGCTGGTGATATTACATATGCGAGTCAATTATCACTTGAAAATCCAGTTGAT
GCTTTTAGTCGTGATGCTATTGGAAGAAGAAGTATGTCAGAAAAACATCATGCAGCACTT
GATGCAAAAGAAACTGGCACATATCAACGAAATAAAAAGATTCGTGAAGAAAGAGAAAAA
AGTAGACATGTATCAAAAACAAATTCTCAGATTCACAGTTCAATTGAATCTCTGACAAAT
ATGAATCGAATTGGAAGTATGAAGACAAGACAAAAATCAGATTTAAGATCAGAAGCAATG
GATAAAGTGACTGATCTCGGTCCATCATTGGGCATGAAAAAATCATCAAGTCTCGAATCA
CTTCAAACAATGGTGCAAGAAATTCAAATGTCAGATGAACCACGTGGACCAAATGCTTTA
AGAGCACCAAGAGGACGTGGTAGAGAAGAAATTCTTCGTGCAGCTGTAGAAAGACCTGAA
TCACAACCACGAAAACATTGGTTATTAGAAGAAAATGGCACAAATGATAATGATGGTGGA
TTTTCAAATCGAGGAGGAACATTGCAATCATCAACAAATGAAGGAAAAATTAAAGATCAA
AAGAAAGGTTTTCTTAAGGGTATTGGGCATATGTTTAGATTTGGAAAGCATAGAAAAGAC
GTATATCCGGCACAAACAGAAGTCATTACTGATTATACCAGTTGGTCAAATGATGTTTCA
GCAAAGAGTGCAACTCTTGGTTCATCAGTTGTCTCATCGCCATCTGTAAACTCGAATACT
TCACAACAAGTTCATAGTCATAATTCATCACATCAAACAAATTCACAAAATCAAAGTCTT
CATCATCATCAACAGCAACAGCAGCAAAAACAACAACATAGAGAGCCAAGTCATGAAAGA
CAACTTTCGGGAAATTCTTCCAATGGTCCGCCATCATATCATGCACCTCCAACAATGCTC
AATGGACACGGAAACAGTAAAATTACTCAAAATGATTTATTTAATCATAGATATTCCCAC
TATGTCAATTATGATGAGCTTCAACTACAAATTAGTCGTCGAAATCAGCACTATCACTCA
CAGCGCTCAGCGCGTAATGTTGATTTGACACATTTTCATCAATATAACGGTTTGGCACCA
ATTGCAAATGGTCATAAATATCCGCACCCAGCTCAGCAACAACAACAACCACAATCAATG
CAGCAGCACCATATGCGTCCAATTTCAAGCTATTATGAATATGAAACGATAAATCCAAAT
GGACATTACAGAAAGCTTGGTGAGCATTTTATTCCACTACAGAACAGTAATAGCAGCAGT
AAAATCATCAATGGAACGAGCTCAGTGAGAGTTTCTGGTTCAACACAACAGAGAGGTCCG
ATTCCCGACATGAATATGAAACAACATCGAGGGCCATTTATCACACAAGTACATATTCGT
GATCAAAACGGTAATAAACATCCGTCAGCATCAAAGATGATTGTCGAAAATCACGAAATG
TCAAGGCAAGAAAGTACTAAGAGTAAGAAGTCAATTTCTTTTAAATCAGATGACACAACT
TATGAGAGACAAAAGCCAATTTCTTATTGGGAAGCACTTGCTAATTTGTTTAAAGCGAAT
GTCGGTACTGGTTGCTTTGGTATGGCTGATGCTATAAAAAATGCAGGAATAATTCTCGGA
CCAATTGCAACAATTATAATTGCAATAATTTGTGTCGAGTGCATGCGAATGTTGCTTGTG
GCTGCTGAATATATTATGATAGAAAATCAACTCAATTCAAGACCAGATTACTCACATGTC
GTTGAATTAAGCTTTTCAAAAAGCAAACATGAACGCTGGAGAAAATATTCACGATTAATG
AGATTAATTTGCAACATTTCACTTTGTCTCACACAATTTGGCTTCTGTTGCGTTTATATT
TTGTTTGTCACAAAAAGCAGTAAAATTGTTCTTGATTATTATGGCATTATTTATGATTTA
AAAATAATTATGGCAATCGTTCTCATACCAATTTTAATGTCTGCTTTAGTTCGTCAATTA
AAAAATATTGCAATATTCTCAGGGATAGCAAATATTTGCATGATTATAGGAGCAGCAATG
ACTCTTATCTATTGCATAGATCTGCCACCATTGAATGAACGTGCATATATTAAACTCGAC
ACTTTACCTCTTTATTTTGGAACAGCTTTATTCGCATTTGAGGGAATTTCACTAGTTTTA
CCACTGCAAAATTCAATGAAGAAACCTGAAAATTTTTCAAAATTTCCATTTGGTGTATTG
CATATAGGAATGTCTTTTGTGAGCATAATTTACACTGTTCTTGGCACAATGGGATATTGG
AAATTTGGAGAACAAACTGAAGGATCGCTGACATTAAATCTTCCAACTGATCAAATTTTG
GCTCAAATCATAATTACTACTGTTTCACTTGGTGTTTTACTGACTTATGCCATTCAATTT
TTTGTTGGAATTCATATAATGTTGCCACCAATTCTTCGAAATTCAAAGACTGCAGCAAAA
TTTCCAATTTTAACTGAGTTAATTTTTAGAACGTTGATGGTTTTTGTGACTTTTATAATT
GCCATGCTTGTGCCTAATTTAAGTTTACTATTGAGTTTGATAGGCTCAGTTTGTTGTGTG
ATTCTAGCATTCATATTTCCATCAATCGTTGAACTCATGACAAGTTATGACAAAGGAAAA
ATTGGAGTTTTTTGTTGGATCAAGAATATTGTTATTTTAATACTTGCTTTATGTGGATTT
ATATTAGGTGGCGGACTCGCATTGAAAGGAATTTATGATGAATTTATTGCGACACATTTA
TAA
>g10938.t1 Gene=g10938 Length=1860
MFDYQPKCPGMLTSKLTSIFGWRHTYNVHDRQKGLNHFKGHANINENGHNLQKSYSLNLP
PKKHHKITASNPSLPEASSSSSTAATTNPESWVVVHHLQSQSGILDPDDRVNDVADDREQ
ILASFDDRSPDPGIPQGGGDGASGSSVGTGSPDIFRIQDGKYSTSNHHQNESIPTHIDVT
ESDQPPVGLTLQVRRGSEPSLLALDQNTQLYPTSENSHEPSKRWSAAPVCRDEPERLLNG
AMTNGSFSSPKWTVPEEEISNETMPSTFTRSGRLSMQFLGDGANYRWIEAAEKAAHNLSR
SDSSQNGSIHANNSNNNSFSSKSLPRDAKQRKEPLGQANVSSYESIRQKNGEMLLVTNES
GGQLGLTAIPDRENGGLLVQSVEPDSRAEKGRLRRGDRILEINGVNLMELSEASVQEQLK
KCIASSELRLRVIRAKSETRDRSKIEMFEAEEKASAHSKVAHVSPTRKPGTIATSSLQAA
NTRKLGRKIEITLKKGAHGLGFSVTTRDNPAGGHCPIYIKNILPKGAAIEDGRLKPGDRL
LEVDNVAMTGKSQAEVVNILRATQPGAVVKIVVSRQQEIPEVDEREIGSEIEQQQQRSTT
LPKQPPPPILPKNVLKSPSAPNINEMLDSKSNSIDNLNENVKMKIKKFNSPSSSLTRDQN
ANIFPWRNREILTFHIPVHDSEKAGLGVSVKGKTGSANPNTSMNTKHDGDLGIFIKSVLH
GGAASRDGRLKMNDQLLSVNGISLLGQSNADAMDTLRRAMLQTGGKHPGVIVLKIARRAS
SRPNSTIENGEQHVVDSSGNTSEQSGSTVIYLSPNDKNSVNQQKEQQMSPNTPQENGKRW
SNPVLDRLTGGTGNSRVQSTLIQMPGGLRNDSYYMATNENWSPNVNLNNSNGVLIEEDSE
PTSPILPIRPDFQHQISASTPTSAGDITYASQLSLENPVDAFSRDAIGRRSMSEKHHAAL
DAKETGTYQRNKKIREEREKSRHVSKTNSQIHSSIESLTNMNRIGSMKTRQKSDLRSEAM
DKVTDLGPSLGMKKSSSLESLQTMVQEIQMSDEPRGPNALRAPRGRGREEILRAAVERPE
SQPRKHWLLEENGTNDNDGGFSNRGGTLQSSTNEGKIKDQKKGFLKGIGHMFRFGKHRKD
VYPAQTEVITDYTSWSNDVSAKSATLGSSVVSSPSVNSNTSQQVHSHNSSHQTNSQNQSL
HHHQQQQQQKQQHREPSHERQLSGNSSNGPPSYHAPPTMLNGHGNSKITQNDLFNHRYSH
YVNYDELQLQISRRNQHYHSQRSARNVDLTHFHQYNGLAPIANGHKYPHPAQQQQQPQSM
QQHHMRPISSYYEYETINPNGHYRKLGEHFIPLQNSNSSSKIINGTSSVRVSGSTQQRGP
IPDMNMKQHRGPFITQVHIRDQNGNKHPSASKMIVENHEMSRQESTKSKKSISFKSDDTT
YERQKPISYWEALANLFKANVGTGCFGMADAIKNAGIILGPIATIIIAIICVECMRMLLV
AAEYIMIENQLNSRPDYSHVVELSFSKSKHERWRKYSRLMRLICNISLCLTQFGFCCVYI
LFVTKSSKIVLDYYGIIYDLKIIMAIVLIPILMSALVRQLKNIAIFSGIANICMIIGAAM
TLIYCIDLPPLNERAYIKLDTLPLYFGTALFAFEGISLVLPLQNSMKKPENFSKFPFGVL
HIGMSFVSIIYTVLGTMGYWKFGEQTEGSLTLNLPTDQILAQIIITTVSLGVLLTYAIQF
FVGIHIMLPPILRNSKTAAKFPILTELIFRTLMVFVTFIIAMLVPNLSLLLSLIGSVCCV
ILAFIFPSIVELMTSYDKGKIGVFCWIKNIVILILALCGFILGGGLALKGIYDEFIATHL
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 37 | g10938.t1 | CDD | cd00992 | PDZ_signaling | 359 | 433 | 2.06537E-14 |
| 36 | g10938.t1 | CDD | cd00992 | PDZ_signaling | 489 | 573 | 3.73386E-17 |
| 38 | g10938.t1 | CDD | cd00992 | PDZ_signaling | 681 | 776 | 1.87135E-13 |
| 11 | g10938.t1 | Gene3D | G3DSA:3.10.20.90 | - | 73 | 129 | 6.9E-12 |
| 14 | g10938.t1 | Gene3D | G3DSA:2.30.42.10 | - | 347 | 457 | 6.5E-15 |
| 12 | g10938.t1 | Gene3D | G3DSA:2.30.42.10 | - | 478 | 578 | 2.7E-33 |
| 13 | g10938.t1 | Gene3D | G3DSA:2.30.42.10 | - | 667 | 779 | 4.5E-28 |
| 67 | g10938.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 64 | 88 | - |
| 68 | g10938.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 88 | - |
| 59 | g10938.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 123 | 147 | - |
| 57 | g10938.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 324 | - |
| 61 | g10938.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 298 | 343 | - |
| 55 | g10938.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 583 | 608 | - |
| 54 | g10938.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 782 | 806 | - |
| 56 | g10938.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 818 | 840 | - |
| 60 | g10938.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 818 | 839 | - |
| 58 | g10938.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 954 | 1018 | - |
| 66 | g10938.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 954 | 986 | - |
| 65 | g10938.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 987 | 1008 | - |
| 62 | g10938.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1094 | 1120 | - |
| 63 | g10938.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1095 | 1114 | - |
| 53 | g10938.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1170 | 1206 | - |
| 64 | g10938.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1170 | 1230 | - |
| 52 | g10938.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1418 | 1437 | - |
| 6 | g10938.t1 | PANTHER | PTHR16484:SF17 | BAZOOKA, ISOFORM B | 87 | 1412 | 2.0E-285 |
| 7 | g10938.t1 | PANTHER | PTHR16484 | PARTITIONING DEFECTIVE 3 RELATED | 87 | 1412 | 2.0E-285 |
| 1 | g10938.t1 | Pfam | PF12053 | N-terminal of Par3 and HAL proteins | 84 | 128 | 3.0E-12 |
| 2 | g10938.t1 | Pfam | PF00595 | PDZ domain | 358 | 430 | 1.9E-9 |
| 3 | g10938.t1 | Pfam | PF00595 | PDZ domain | 490 | 571 | 7.0E-11 |
| 4 | g10938.t1 | Pfam | PF00595 | PDZ domain | 682 | 758 | 8.5E-11 |
| 5 | g10938.t1 | Pfam | PF01490 | Transmembrane amino acid transporter protein | 1446 | 1842 | 2.5E-65 |
| 23 | g10938.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1 | 1474 | - |
| 29 | g10938.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1475 | 1499 | - |
| 19 | g10938.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1500 | 1541 | - |
| 31 | g10938.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1542 | 1562 | - |
| 22 | g10938.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1563 | 1573 | - |
| 32 | g10938.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1574 | 1596 | - |
| 15 | g10938.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1597 | 1602 | - |
| 28 | g10938.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1603 | 1624 | - |
| 20 | g10938.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1625 | 1643 | - |
| 33 | g10938.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1644 | 1663 | - |
| 17 | g10938.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1664 | 1674 | - |
| 34 | g10938.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1675 | 1699 | - |
| 25 | g10938.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1700 | 1718 | - |
| 30 | g10938.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1719 | 1746 | - |
| 18 | g10938.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1747 | 1766 | - |
| 27 | g10938.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1767 | 1784 | - |
| 21 | g10938.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1785 | 1789 | - |
| 35 | g10938.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1790 | 1810 | - |
| 16 | g10938.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1811 | 1829 | - |
| 26 | g10938.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1830 | 1852 | - |
| 24 | g10938.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 1853 | 1860 | - |
| 70 | g10938.t1 | ProSiteProfiles | PS50106 | PDZ domain profile. | 352 | 434 | 15.22 |
| 69 | g10938.t1 | ProSiteProfiles | PS50106 | PDZ domain profile. | 490 | 575 | 18.094 |
| 71 | g10938.t1 | ProSiteProfiles | PS50106 | PDZ domain profile. | 675 | 759 | 17.23 |
| 50 | g10938.t1 | SMART | SM00228 | pdz_new | 362 | 436 | 7.0E-13 |
| 51 | g10938.t1 | SMART | SM00228 | pdz_new | 498 | 577 | 5.2E-19 |
| 49 | g10938.t1 | SMART | SM00228 | pdz_new | 684 | 779 | 9.8E-14 |
| 9 | g10938.t1 | SUPERFAMILY | SSF50156 | PDZ domain-like | 356 | 438 | 6.7E-16 |
| 8 | g10938.t1 | SUPERFAMILY | SSF50156 | PDZ domain-like | 476 | 581 | 3.81E-23 |
| 10 | g10938.t1 | SUPERFAMILY | SSF50156 | PDZ domain-like | 656 | 778 | 2.89E-20 |
| 48 | g10938.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1478 | 1500 | - |
| 43 | g10938.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1542 | 1564 | - |
| 45 | g10938.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1575 | 1597 | - |
| 47 | g10938.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1604 | 1626 | - |
| 46 | g10938.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1641 | 1660 | - |
| 39 | g10938.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1677 | 1699 | - |
| 41 | g10938.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1719 | 1741 | - |
| 44 | g10938.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1762 | 1784 | - |
| 42 | g10938.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1788 | 1810 | - |
| 40 | g10938.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 1830 | 1852 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
- This transcript has been annotated with K04237 (partitioning defective protein 3)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
