Gene loci information

Transcript annotation

  • This transcript has been annotated as Proton-coupled amino acid transporter-like protein CG1139.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10938 g10938.t4 TTS g10938.t4 12868280 12868280
chr_1 g10938 g10938.t4 isoform g10938.t4 12868552 12870072
chr_1 g10938 g10938.t4 exon g10938.t4.exon1 12868552 12869012
chr_1 g10938 g10938.t4 cds g10938.t4.CDS1 12868552 12869012
chr_1 g10938 g10938.t4 exon g10938.t4.exon2 12869066 12869377
chr_1 g10938 g10938.t4 cds g10938.t4.CDS2 12869066 12869377
chr_1 g10938 g10938.t4 exon g10938.t4.exon3 12869443 12869868
chr_1 g10938 g10938.t4 cds g10938.t4.CDS3 12869443 12869868
chr_1 g10938 g10938.t4 exon g10938.t4.exon4 12869925 12870072
chr_1 g10938 g10938.t4 cds g10938.t4.CDS4 12869925 12870072
chr_1 g10938 g10938.t4 TSS g10938.t4 12870154 12870154

Sequences

>g10938.t4 Gene=g10938 Length=1347
ATGATTGTCGAAAATCACGAAATGTCAAGGCAAGAAAGTACTAAGAGTAAGAAGTCAATT
TCTTTTAAATCAGATGACACAACTTATGAGAGACAAAAGCCAATTTCTTATTGGGAAGCA
CTTGCTAATTTGTTTAAAGCGAATGTCGGTACTGGTTGCTTTGGTATGGCTGATGCTATA
AAAAATGCAGGAATAATTCTCGGACCAATTGCAACAATTATAATTGCAATAATTTGTGTC
GAGTGCATGCGAATGTTGCTTGTGGCTGCTGAATATATTATGATAGAAAATCAACTCAAT
TCAAGACCAGATTACTCACATGTCGTTGAATTAAGCTTTTCAAAAAGCAAACATGAACGC
TGGAGAAAATATTCACGATTAATGAGATTAATTTGCAACATTTCACTTTGTCTCACACAA
TTTGGCTTCTGTTGCGTTTATATTTTGTTTGTCACAAAAAGCAGTAAAATTGTTCTTGAT
TATTATGGCATTATTTATGATTTAAAAATAATTATGGCAATCGTTCTCATACCAATTTTA
ATGTCTGCTTTAGTTCGTCAATTAAAAAATATTGCAATATTCTCAGGGATAGCAAATATT
TGCATGATTATAGGAGCAGCAATGACTCTTATCTATTGCATAGATCTGCCACCATTGAAT
GAACGTGCATATATTAAACTCGACACTTTACCTCTTTATTTTGGAACAGCTTTATTCGCA
TTTGAGGGAATTTCACTAGTTTTACCACTGCAAAATTCAATGAAGAAACCTGAAAATTTT
TCAAAATTTCCATTTGGTGTATTGCATATAGGAATGTCTTTTGTGAGCATAATTTACACT
GTTCTTGGCACAATGGGATATTGGAAATTTGGAGAACAAACTGAAGGATCGCTGACATTA
AATCTTCCAACTGATCAAATTTTGGCTCAAATCATAATTACTACTGTTTCACTTGGTGTT
TTACTGACTTATGCCATTCAATTTTTTGTTGGAATTCATATAATGTTGCCACCAATTCTT
CGAAATTCAAAGACTGCAGCAAAATTTCCAATTTTAACTGAGTTAATTTTTAGAACGTTG
ATGGTTTTTGTGACTTTTATAATTGCCATGCTTGTGCCTAATTTAAGTTTACTATTGAGT
TTGATAGGCTCAGTTTGTTGTGTGATTCTAGCATTCATATTTCCATCAATCGTTGAACTC
ATGACAAGTTATGACAAAGGAAAAATTGGAGTTTTTTGTTGGATCAAGAATATTGTTATT
TTAATACTTGCTTTATGTGGATTTATATTAGGTGGCGGACTCGCATTGAAAGGAATTTAT
GATGAATTTATTGCGACACATTTATAA

>g10938.t4 Gene=g10938 Length=448
MIVENHEMSRQESTKSKKSISFKSDDTTYERQKPISYWEALANLFKANVGTGCFGMADAI
KNAGIILGPIATIIIAIICVECMRMLLVAAEYIMIENQLNSRPDYSHVVELSFSKSKHER
WRKYSRLMRLICNISLCLTQFGFCCVYILFVTKSSKIVLDYYGIIYDLKIIMAIVLIPIL
MSALVRQLKNIAIFSGIANICMIIGAAMTLIYCIDLPPLNERAYIKLDTLPLYFGTALFA
FEGISLVLPLQNSMKKPENFSKFPFGVLHIGMSFVSIIYTVLGTMGYWKFGEQTEGSLTL
NLPTDQILAQIIITTVSLGVLLTYAIQFFVGIHIMLPPILRNSKTAAKFPILTELIFRTL
MVFVTFIIAMLVPNLSLLLSLIGSVCCVILAFIFPSIVELMTSYDKGKIGVFCWIKNIVI
LILALCGFILGGGLALKGIYDEFIATHL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g10938.t4 MobiDBLite mobidb-lite consensus disorder prediction 1 23 -
2 g10938.t4 PANTHER PTHR22950 AMINO ACID TRANSPORTER 13 443 1.1E-102
3 g10938.t4 PANTHER PTHR22950:SF150 FI17861P1 13 443 1.1E-102
1 g10938.t4 Pfam PF01490 Transmembrane amino acid transporter protein 34 430 7.8E-67
22 g10938.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 64 -
27 g10938.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 65 87 -
19 g10938.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 88 129 -
34 g10938.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 130 150 -
23 g10938.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 151 161 -
29 g10938.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 162 184 -
16 g10938.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 185 190 -
35 g10938.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 191 212 -
21 g10938.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 213 231 -
33 g10938.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 232 251 -
18 g10938.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 252 262 -
28 g10938.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 263 287 -
25 g10938.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 288 306 -
30 g10938.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 307 334 -
15 g10938.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 335 354 -
26 g10938.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 355 372 -
20 g10938.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 373 377 -
31 g10938.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 378 398 -
17 g10938.t4 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 399 417 -
32 g10938.t4 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 418 440 -
24 g10938.t4 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 441 448 -
8 g10938.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 66 88 -
5 g10938.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 130 152 -
13 g10938.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 163 185 -
11 g10938.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 192 214 -
7 g10938.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 229 248 -
12 g10938.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 265 287 -
10 g10938.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 307 329 -
6 g10938.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 350 372 -
4 g10938.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 376 398 -
9 g10938.t4 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 418 440 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed