General information for g10965.t11
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10965 is located on chr_1: 13050811..13051436 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10965 | g10965.t11 | TSS | g10965.t11 | 13048366 | 13048366 |
| chr_1 | g10965 | g10965.t11 | isoform | g10965.t11 | 13049084 | 13051235 |
| chr_1 | g10965 | g10965.t11 | exon | g10965.t11.exon1 | 13049084 | 13049324 |
| chr_1 | g10965 | g10965.t11 | exon | g10965.t11.exon2 | 13049371 | 13049663 |
| chr_1 | g10965 | g10965.t11 | exon | g10965.t11.exon3 | 13049736 | 13050097 |
| chr_1 | g10965 | g10965.t11 | cds | g10965.t11.CDS1 | 13049944 | 13050097 |
| chr_1 | g10965 | g10965.t11 | exon | g10965.t11.exon4 | 13050152 | 13050418 |
| chr_1 | g10965 | g10965.t11 | cds | g10965.t11.CDS2 | 13050152 | 13050418 |
| chr_1 | g10965 | g10965.t11 | exon | g10965.t11.exon5 | 13050485 | 13050594 |
| chr_1 | g10965 | g10965.t11 | cds | g10965.t11.CDS3 | 13050485 | 13050594 |
| chr_1 | g10965 | g10965.t11 | exon | g10965.t11.exon6 | 13050901 | 13051235 |
| chr_1 | g10965 | g10965.t11 | cds | g10965.t11.CDS4 | 13050901 | 13050966 |
| chr_1 | g10965 | g10965.t11 | TTS | g10965.t11 | 13051408 | 13051408 |
Sequences
>g10965.t11 Gene=g10965 Length=1608
ATGTCCGCTGAGTTTATTCAGGTTGCAGAGGATTTCAATGATGAGCCAATTGAGTTGCCT
CTCGAAGAGGACAATACATTATTATTGTCAACATTACAAGCTCAATTTCCAGGTGCAACT
GGACTCAAGTATAGAAATCCTGAAAATAAAGCAATTCGAGGAATTCGTCTTACTGATTCA
AAATTACATCCACCAGGAAATGGATGGGATGGTTTAGTGTTTTATTGTGTCTTTCCAAAG
GAATCCATTTCAGAAAATAAACGCAAAAGTGATGATGTTATGGAAAATGTCTCGAAATCA
AAAGTATCGAAATGCCAATCTAATAAATGCACTGATTTGATTGTTCTCGGACTAGCATGG
AAATCTAATGAGCAAGTTTTGAGAGATTATTTTGAAACTTTTGGAGAAGTTTTGATGGTA
CAAGTGAAGAAAGATGCCAAAGGACAATCGAAAGGGTTTGGATTTGTAAGATTTTCTAAT
TATGAAACACAATTGCGAGTTCTGGGTCAACGTCATCACATCGATGGCAGGTTTGTGGTG
TGAAGTTAAAGTTCCAAATTCAAAAGAAGGACAAATTCAACAAGTTCCATGCAAAGTTTT
TGTTGGGAGATGCACCGAAGATTTGACACAAGACGATTTGAGAGATTATTTCAGTAAATT
TGGCGAAGTTACAGATGTCTTCATACCAAAGCCTTTTAGAGCTTTTAGCTTTGTCACTTT
TTTGGATCCTGAAATTGCTCAAATGTTGTGCGGAGAAGATCACATCATAAAAGGTGTTTC
CGTTCACGTTTCAAATGCAGCACCAAAAGCTGACGGAAATCGAAATCAGAATTATGCAAA
TTCTATGAACAGTCGCAATCAAAATTATGGTGGAGGAAGCAGTGGTTATAATAATAATTC
AAATTATAATCGCGGTAATGACTTTATGGATCGAAATGGCAGTCGTGGAGGAGGCAGTAA
CATGAATAGCGGTGGCCCAAACGGAAATTTTATGCCAAATAATCCAAATAATGGAAATGC
ATGGGGTGGAGGAGGTAGTGGAAGCAACAGTCGTAACTTAGATATGCCCAATTTACAAGC
TCTTGGACTTAATCCAAGTGGAAATCCAGGAAATCAAAGCAGCGGAGGAAACAGCAATAG
TGGTATGAACAATAATCCCATGGGTGTTGGATTGAATGCTTTAAATTTACCAATGAATCC
TGCAATTGTTGCTGCTGCACTTAATCAGTGGGGTTTATTGAGTGGAATGCAAAATCAAAA
TCAAAATGATCAGGGACCAAACAATCAGCCATGGAATCAACGAAACAACCAAGCTCCTGA
CAAAACAAACTTCATGTAATGCGACTGCAAATAACTTTTTTACTCTACAATTTTAAAGCC
CGTCTCTAAATATTAACAAATTTTTTTCAACTTCTTTTCTATTGACATACAAAATCATAA
ATATTTGACCTCTTTCTAACTATTGTATAATTTTTATTATTTAGGTTAGACAAACGAATG
GTGAAGAAGAAGAAGTATGATTGTGACTATAATTATTATAATTATATGGGTCCTGATGAA
TGTGTTGCAAAGAATAAGTATGATTGGTTGGGCCAATATAAGAAATAA
>g10965.t11 Gene=g10965 Length=198
MLCGEDHIIKGVSVHVSNAAPKADGNRNQNYANSMNSRNQNYGGGSSGYNNNSNYNRGND
FMDRNGSRGGGSNMNSGGPNGNFMPNNPNNGNAWGGGGSGSNSRNLDMPNLQALGLNPSG
NPGNQSSGGNSNSGMNNNPMGVGLNALNLPMNPAIVAAALNQWGLLSGMQNQNQNDQGPN
NQPWNQRNNQAPDKTNFM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g10965.t11 | MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 198 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed