General information for g10965.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10965 is located on chr_1: 13050811..13051436 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10965 | g10965.t17 | isoform | g10965.t17 | 13050152 | 13051235 |
| chr_1 | g10965 | g10965.t17 | exon | g10965.t17.exon1 | 13050152 | 13050418 |
| chr_1 | g10965 | g10965.t17 | cds | g10965.t17.CDS1 | 13050181 | 13050418 |
| chr_1 | g10965 | g10965.t17 | exon | g10965.t17.exon2 | 13050485 | 13050594 |
| chr_1 | g10965 | g10965.t17 | cds | g10965.t17.CDS2 | 13050485 | 13050594 |
| chr_1 | g10965 | g10965.t17 | exon | g10965.t17.exon3 | 13050716 | 13050817 |
| chr_1 | g10965 | g10965.t17 | cds | g10965.t17.CDS3 | 13050716 | 13050817 |
| chr_1 | g10965 | g10965.t17 | exon | g10965.t17.exon4 | 13050901 | 13051235 |
| chr_1 | g10965 | g10965.t17 | cds | g10965.t17.CDS4 | 13050901 | 13050966 |
| chr_1 | g10965 | g10965.t17 | TTS | g10965.t17 | 13051408 | 13051408 |
| chr_1 | g10965 | g10965.t17 | TSS | g10965.t17 | NA | NA |
Sequences
>g10965.t17 Gene=g10965 Length=814
ATTCAAATTATAATCGCGGTAATGACTTTATGGATCGAAATGGCAGTCGTGGAGGAGGCA
GTAACATGAATAGCGGTGGCCCAAACGGAAATTTTATGCCAAATAATCCAAATAATGGAA
ATGCATGGGGTGGAGGAGGTAGTGGAAGCAACAGTCGTAACTTAGATATGCCCAATTTAC
AAGCTCTTGGACTTAATCCAAGTGGAAATCCAGGAAATCAAAGCAGCGGAGGAAACAGCA
ATAGTGGTATGAACAATAATCCCATGGGTGTTGGATTGAATGCTTTAAATTTACCAATGA
ATCCTGCAATTGTTGCTGCTGCACTTAATCAGTGGGGTTTATTGAGTGGAATGCAAAATC
AAAATCAAAATGATCAGGGTTTTACTAACAATTCGAGTAATAGTTTTATGTCATGGATGA
ATCAACAAAATAGTAGTGGTGGTTCAGGAAATAATCCTCCAATAAATAACGACAGTCAAG
GACCAAACAATCAGCCATGGAATCAACGAAACAACCAAGCTCCTGACAAAACAAACTTCA
TGTAATGCGACTGCAAATAACTTTTTTACTCTACAATTTTAAAGCCCGTCTCTAAATATT
AACAAATTTTTTTCAACTTCTTTTCTATTGACATACAAAATCATAAATATTTGACCTCTT
TCTAACTATTGTATAATTTTTATTATTTAGGTTAGACAAACGAATGGTGAAGAAGAAGAA
GTATGATTGTGACTATAATTATTATAATTATATGGGTCCTGATGAATGTGTTGCAAAGAA
TAAGTATGATTGGTTGGGCCAATATAAGAAATAA
>g10965.t17 Gene=g10965 Length=171
MDRNGSRGGGSNMNSGGPNGNFMPNNPNNGNAWGGGGSGSNSRNLDMPNLQALGLNPSGN
PGNQSSGGNSNSGMNNNPMGVGLNALNLPMNPAIVAAALNQWGLLSGMQNQNQNDQGFTN
NSSNSFMSWMNQQNSSGGSGNNPPINNDSQGPNNQPWNQRNNQAPDKTNFM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 2 | g10965.t17 | MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - |
| 1 | g10965.t17 | MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 171 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
