General information for g10965.t5
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10965 is located on chr_1: 13050811..13051436 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10965 | g10965.t5 | TSS | g10965.t5 | 13048366 | 13048366 |
| chr_1 | g10965 | g10965.t5 | isoform | g10965.t5 | 13048481 | 13051235 |
| chr_1 | g10965 | g10965.t5 | exon | g10965.t5.exon1 | 13048481 | 13048649 |
| chr_1 | g10965 | g10965.t5 | exon | g10965.t5.exon2 | 13049082 | 13049324 |
| chr_1 | g10965 | g10965.t5 | exon | g10965.t5.exon3 | 13049371 | 13049663 |
| chr_1 | g10965 | g10965.t5 | exon | g10965.t5.exon4 | 13049736 | 13050097 |
| chr_1 | g10965 | g10965.t5 | cds | g10965.t5.CDS1 | 13049944 | 13050097 |
| chr_1 | g10965 | g10965.t5 | exon | g10965.t5.exon5 | 13050152 | 13050418 |
| chr_1 | g10965 | g10965.t5 | cds | g10965.t5.CDS2 | 13050152 | 13050418 |
| chr_1 | g10965 | g10965.t5 | exon | g10965.t5.exon6 | 13050485 | 13050594 |
| chr_1 | g10965 | g10965.t5 | cds | g10965.t5.CDS3 | 13050485 | 13050594 |
| chr_1 | g10965 | g10965.t5 | exon | g10965.t5.exon7 | 13050901 | 13051235 |
| chr_1 | g10965 | g10965.t5 | cds | g10965.t5.CDS4 | 13050901 | 13050966 |
| chr_1 | g10965 | g10965.t5 | TTS | g10965.t5 | 13051408 | 13051408 |
Sequences
>g10965.t5 Gene=g10965 Length=1779
TTGTAATAAGCCCTTTTAGTTGTCTGATATATAAGAAGTGATCGAAGGATTGAAAAGAGC
TTATGTTTGATTTTGAGATTTTGTGAAGAAAGATTTCTGAAAGAAAACAAATTTTGCATA
CAAATCGAGTGAATTTTTTGAGTTAGTGGCTGTTTGATAACAGTTGAAGTCATGTCCGCT
GAGTTTATTCAGGTTGCAGAGGATTTCAATGATGAGCCAATTGAGTTGCCTCTCGAAGAG
GACAATACATTATTATTGTCAACATTACAAGCTCAATTTCCAGGTGCAACTGGACTCAAG
TATAGAAATCCTGAAAATAAAGCAATTCGAGGAATTCGTCTTACTGATTCAAAATTACAT
CCACCAGGAAATGGATGGGATGGTTTAGTGTTTTATTGTGTCTTTCCAAAGGAATCCATT
TCAGAAAATAAACGCAAAAGTGATGATGTTATGGAAAATGTCTCGAAATCAAAAGTATCG
AAATGCCAATCTAATAAATGCACTGATTTGATTGTTCTCGGACTAGCATGGAAATCTAAT
GAGCAAGTTTTGAGAGATTATTTTGAAACTTTTGGAGAAGTTTTGATGGTACAAGTGAAG
AAAGATGCCAAAGGACAATCGAAAGGGTTTGGATTTGTAAGATTTTCTAATTATGAAACA
CAATTGCGAGTTCTGGGTCAACGTCATCACATCGATGGCAGGTTTGTGGTGTGAAGTTAA
AGTTCCAAATTCAAAAGAAGGACAAATTCAACAAGTTCCATGCAAAGTTTTTGTTGGGAG
ATGCACCGAAGATTTGACACAAGACGATTTGAGAGATTATTTCAGTAAATTTGGCGAAGT
TACAGATGTCTTCATACCAAAGCCTTTTAGAGCTTTTAGCTTTGTCACTTTTTTGGATCC
TGAAATTGCTCAAATGTTGTGCGGAGAAGATCACATCATAAAAGGTGTTTCCGTTCACGT
TTCAAATGCAGCACCAAAAGCTGACGGAAATCGAAATCAGAATTATGCAAATTCTATGAA
CAGTCGCAATCAAAATTATGGTGGAGGAAGCAGTGGTTATAATAATAATTCAAATTATAA
TCGCGGTAATGACTTTATGGATCGAAATGGCAGTCGTGGAGGAGGCAGTAACATGAATAG
CGGTGGCCCAAACGGAAATTTTATGCCAAATAATCCAAATAATGGAAATGCATGGGGTGG
AGGAGGTAGTGGAAGCAACAGTCGTAACTTAGATATGCCCAATTTACAAGCTCTTGGACT
TAATCCAAGTGGAAATCCAGGAAATCAAAGCAGCGGAGGAAACAGCAATAGTGGTATGAA
CAATAATCCCATGGGTGTTGGATTGAATGCTTTAAATTTACCAATGAATCCTGCAATTGT
TGCTGCTGCACTTAATCAGTGGGGTTTATTGAGTGGAATGCAAAATCAAAATCAAAATGA
TCAGGGACCAAACAATCAGCCATGGAATCAACGAAACAACCAAGCTCCTGACAAAACAAA
CTTCATGTAATGCGACTGCAAATAACTTTTTTACTCTACAATTTTAAAGCCCGTCTCTAA
ATATTAACAAATTTTTTTCAACTTCTTTTCTATTGACATACAAAATCATAAATATTTGAC
CTCTTTCTAACTATTGTATAATTTTTATTATTTAGGTTAGACAAACGAATGGTGAAGAAG
AAGAAGTATGATTGTGACTATAATTATTATAATTATATGGGTCCTGATGAATGTGTTGCA
AAGAATAAGTATGATTGGTTGGGCCAATATAAGAAATAA
>g10965.t5 Gene=g10965 Length=198
MLCGEDHIIKGVSVHVSNAAPKADGNRNQNYANSMNSRNQNYGGGSSGYNNNSNYNRGND
FMDRNGSRGGGSNMNSGGPNGNFMPNNPNNGNAWGGGGSGSNSRNLDMPNLQALGLNPSG
NPGNQSSGGNSNSGMNNNPMGVGLNALNLPMNPAIVAAALNQWGLLSGMQNQNQNDQGPN
NQPWNQRNNQAPDKTNFM
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g10965.t5 | MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 198 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
