General information for g10967.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Zinc finger protein 724.
Parent gene
- The parent gene g10967 is located on chr_1: 13054320..13055737 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10967 | g10967.t1 | TTS | g10967.t1 | 13054184 | 13054184 |
| chr_1 | g10967 | g10967.t1 | isoform | g10967.t1 | 13054320 | 13055737 |
| chr_1 | g10967 | g10967.t1 | exon | g10967.t1.exon1 | 13054320 | 13055557 |
| chr_1 | g10967 | g10967.t1 | cds | g10967.t1.CDS1 | 13054320 | 13055557 |
| chr_1 | g10967 | g10967.t1 | exon | g10967.t1.exon2 | 13055617 | 13055737 |
| chr_1 | g10967 | g10967.t1 | cds | g10967.t1.CDS2 | 13055617 | 13055737 |
| chr_1 | g10967 | g10967.t1 | TSS | g10967.t1 | 13055798 | 13055798 |
Sequences
>g10967.t1 Gene=g10967 Length=1359
ATGGAAGAAGATATAAATTACAAAGAAGAACAAACATATGATGAAGAAGAGTATTGTAAT
TTATGTGAAAGTGCACAAGATTTGATTAGTCAAATAGCAGAACATTATAAAATTTATCAT
GCGGATTCAATAAATTATGATAATTTTATGAAAACCTGTAATTGTGATGAAATTTTTGAA
ATGCGAGATATGCTAATTAATCATCAAATATCTCATATTATTCAAAAACCAAAAATTGAT
GTTTTAGAAGAAGGAGAAGATTTTATGTTAGTTGAATATGTTGATGATGATGAGGAGCAA
GTGATTGTGGAAGATGTAAATATTCATGAACAAGTATTAGTTGAAGACAAGCCTGATACA
ATTGAATTTGAAGAGTACATTACTATTGAAGAAACAAAAGAATTAAAGAAATGTAATCAA
TGTAATGCTCAATATTATTCAACCAAAAGTCTTGTCAGTCATTATCAAAATGAACACGAT
CCCAGCAACAAAATGAAATGTCCAGAATGCAACAATCGATTTAATTGCGAGAAGAAATTA
AGAACACATTTAAATAAGCATGAAGCTGAAAAATCTTATAGAGATGGAAAATATTTTTGC
CAAATTTGTGATAAACAATGTTTAACTAAAGGTCGACTGATTGCACATAAACAAACTCAT
TATCAGGATTTTGAATGCGATTATTGTGGTAAAAAATTCACAAAATATGAATTTTTACAG
AATCACGTTATTCAGCATGCTTTTGGACGTAAAAGAAAAGATCCCAATGATTTGACAAAT
AAAATTGTTTGTCCACTCTGCTCAAAGTTGGTTCCCAAAGACCGTATGAAACGGCACAAC
TTTATCTTTCATTCTGATGAACGTCCTTATGTATGCAACGAATGTGGAAAATCTTTCAAA
TATTCGGAACCCTACTCAAATCATTTAGATATGCATGCACAAACACCAAAGTATAGATGT
GAATATTGTTTGAAAATGTTCTATAATCAATCAAATTTGCGTCAACATGTATACCGACAT
ACAGATCCCGATAGGTTCAAATGTGAGTTTTGTTCCGAACGATTTGGCAGTTCAAGTTCT
CTAAAAATGCATATCAAACGTTTACATGAAAAAAATGATGAAAAAGAATCTCTCCAATGC
AGTGATTGCGGAAAAATTTTCAAACACACTACAAGTCTGAAAAATCACATAAATCAAGTT
CATTCTCAAAAAGAAGAAGTTTTAAGAAAATGCAATTATTGTCCCTATACATGCTTTAAA
ATTAAGAATCTTTTGAAACATACTACTCGAGTTCATAAGATCAAAAAACGAGACTATAGA
ATTTTTCCAAATAGCGAATATGAAGATTTACAGGAATAG
>g10967.t1 Gene=g10967 Length=452
MEEDINYKEEQTYDEEEYCNLCESAQDLISQIAEHYKIYHADSINYDNFMKTCNCDEIFE
MRDMLINHQISHIIQKPKIDVLEEGEDFMLVEYVDDDEEQVIVEDVNIHEQVLVEDKPDT
IEFEEYITIEETKELKKCNQCNAQYYSTKSLVSHYQNEHDPSNKMKCPECNNRFNCEKKL
RTHLNKHEAEKSYRDGKYFCQICDKQCLTKGRLIAHKQTHYQDFECDYCGKKFTKYEFLQ
NHVIQHAFGRKRKDPNDLTNKIVCPLCSKLVPKDRMKRHNFIFHSDERPYVCNECGKSFK
YSEPYSNHLDMHAQTPKYRCEYCLKMFYNQSNLRQHVYRHTDPDRFKCEFCSERFGSSSS
LKMHIKRLHEKNDEKESLQCSDCGKIFKHTTSLKNHINQVHSQKEEVLRKCNYCPYTCFK
IKNLLKHTTRVHKIKKRDYRIFPNSEYEDLQE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 39 | g10967.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 109 | 193 | 5.2E-7 |
| 38 | g10967.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 197 | 246 | 1.4E-8 |
| 36 | g10967.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 249 | 313 | 1.4E-10 |
| 35 | g10967.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 314 | 373 | 9.7E-14 |
| 37 | g10967.t1 | Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 375 | 446 | 1.5E-7 |
| 7 | g10967.t1 | PANTHER | PTHR24404:SF41 | ZINC FINGER PROTEIN 501 | 14 | 243 | 5.6E-72 |
| 10 | g10967.t1 | PANTHER | PTHR24404 | ZINC FINGER PROTEIN | 14 | 243 | 5.6E-72 |
| 6 | g10967.t1 | PANTHER | PTHR24404:SF41 | ZINC FINGER PROTEIN 501 | 132 | 371 | 5.6E-72 |
| 9 | g10967.t1 | PANTHER | PTHR24404 | ZINC FINGER PROTEIN | 132 | 371 | 5.6E-72 |
| 8 | g10967.t1 | PANTHER | PTHR24404:SF41 | ZINC FINGER PROTEIN 501 | 260 | 435 | 5.6E-72 |
| 11 | g10967.t1 | PANTHER | PTHR24404 | ZINC FINGER PROTEIN | 260 | 435 | 5.6E-72 |
| 1 | g10967.t1 | Pfam | PF13894 | C2H2-type zinc finger | 224 | 246 | 8.5E-4 |
| 3 | g10967.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 290 | 312 | 0.0013 |
| 5 | g10967.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 318 | 340 | 5.0E-4 |
| 4 | g10967.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 346 | 369 | 0.0017 |
| 2 | g10967.t1 | Pfam | PF00096 | Zinc finger, C2H2 type | 379 | 401 | 1.6E-4 |
| 30 | g10967.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 138 | 159 | - |
| 28 | g10967.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 167 | 187 | - |
| 31 | g10967.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 226 | 246 | - |
| 29 | g10967.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 292 | 312 | - |
| 33 | g10967.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 320 | 340 | - |
| 34 | g10967.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 348 | 369 | - |
| 27 | g10967.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 380 | 401 | - |
| 32 | g10967.t1 | ProSitePatterns | PS00028 | Zinc finger C2H2 type domain signature. | 411 | 432 | - |
| 40 | g10967.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 165 | 192 | 11.032 |
| 42 | g10967.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 198 | 225 | 8.663 |
| 41 | g10967.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 224 | 251 | 11.053 |
| 44 | g10967.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 290 | 317 | 11.198 |
| 43 | g10967.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 318 | 345 | 11.427 |
| 46 | g10967.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 346 | 374 | 11.302 |
| 45 | g10967.t1 | ProSiteProfiles | PS50157 | Zinc finger C2H2 type domain profile. | 378 | 406 | 12.445 |
| 23 | g10967.t1 | SMART | SM00355 | c2h2final6 | 51 | 72 | 230.0 |
| 19 | g10967.t1 | SMART | SM00355 | c2h2final6 | 136 | 159 | 1.2 |
| 21 | g10967.t1 | SMART | SM00355 | c2h2final6 | 165 | 187 | 0.96 |
| 25 | g10967.t1 | SMART | SM00355 | c2h2final6 | 198 | 220 | 0.019 |
| 22 | g10967.t1 | SMART | SM00355 | c2h2final6 | 224 | 246 | 0.005 |
| 18 | g10967.t1 | SMART | SM00355 | c2h2final6 | 262 | 284 | 150.0 |
| 17 | g10967.t1 | SMART | SM00355 | c2h2final6 | 290 | 312 | 0.035 |
| 20 | g10967.t1 | SMART | SM00355 | c2h2final6 | 318 | 340 | 0.0033 |
| 26 | g10967.t1 | SMART | SM00355 | c2h2final6 | 346 | 369 | 0.0015 |
| 16 | g10967.t1 | SMART | SM00355 | c2h2final6 | 378 | 401 | 0.0049 |
| 24 | g10967.t1 | SMART | SM00355 | c2h2final6 | 409 | 432 | 4.2 |
| 12 | g10967.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 198 | 246 | 5.33E-8 |
| 13 | g10967.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 278 | 327 | 8.22E-10 |
| 14 | g10967.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 312 | 364 | 1.01E-11 |
| 15 | g10967.t1 | SUPERFAMILY | SSF57667 | beta-beta-alpha zinc fingers | 378 | 428 | 1.19E-5 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
