Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10976 g10976.t2 isoform g10976.t2 13106855 13108047
chr_1 g10976 g10976.t2 exon g10976.t2.exon1 13106855 13106857
chr_1 g10976 g10976.t2 exon g10976.t2.exon2 13106924 13107012
chr_1 g10976 g10976.t2 exon g10976.t2.exon3 13107065 13107264
chr_1 g10976 g10976.t2 exon g10976.t2.exon4 13107384 13107886
chr_1 g10976 g10976.t2 cds g10976.t2.CDS1 13107426 13107886
chr_1 g10976 g10976.t2 exon g10976.t2.exon5 13107942 13108047
chr_1 g10976 g10976.t2 cds g10976.t2.CDS2 13107942 13108047
chr_1 g10976 g10976.t2 TTS g10976.t2 13108157 13108157
chr_1 g10976 g10976.t2 TSS g10976.t2 NA NA

Sequences

>g10976.t2 Gene=g10976 Length=901
ATGGAAAATAATTTTGAGTTGATTATTCCATCTTATAAGTACAATTTTGGATCTCAAAAT
AAAAATGTATTCAAAAATGAATATGGCACATGGACCATATATATTTTTTCATCGCACAAT
TGCAGCCTTAATGGCATAGTAATTCTTGATCCAGTTTTTGATCAAAAAAGACTTGATTAT
AAGCAAATTAAAATTGATGTTGAATGCATAAATCCAGATGGTCATAATTCTTTTGTTATT
GCTAAACATCTTGAGAAAGCTATTTTTACGTTTGGACCAACTGACAGTCAATTTTGATAT
AAAACACCCAATTGATGTTTTTTTTCAGATCACGATGCCAGAAATTTCAAATGCTGAAGA
AAAGGAAACTGGTGTAAAAAGCCATTTAAAATCATTGTTTGACTCTAAAAAGGATGCTGA
TATCACAATCAAAGTAGAAGATGAAGAGATCAAAGTTCATAAAGTTATTTTGAAACGTTC
GGAAGTCTTTGCAAAATTATTAAGTGACACAGAAAATGAAACTGAGAGTGATATCATAGA
ATTGAAGGATATCAAACATGAAGTAATCGTTGAAATGTGCCGATATCTGTATTACGATGA
AATTCCAAAAATCAAAATATTAGCTCTTCCTCTGTTAGTTGCTGCGGGCAAATATTCAAT
CGATGACTTGGCTGAGAAATGTGAGAAGTATTTAATGACAAACATAACTTTTGAAAACTA
TTATGATGTTTTAACAACTGCTTATGAACTTCAAAAGGAAGATTTGCGCAAAGTTGCAGC
TGATTTTGTTATTAAGAACAACGAGTCTATTTTCTCGTCTGATATGTGGAATAAATTGAA
GATAGAACATGCACAACTTGCTATGCTTGTCATGGAAGAATATATATTGAAGAACAAATA
A

>g10976.t2 Gene=g10976 Length=188
MPEISNAEEKETGVKSHLKSLFDSKKDADITIKVEDEEIKVHKVILKRSEVFAKLLSDTE
NETESDIIELKDIKHEVIVEMCRYLYYDEIPKIKILALPLLVAAGKYSIDDLAEKCEKYL
MTNITFENYYDVLTTAYELQKEDLRKVAADFVIKNNESIFSSDMWNKLKIEHAQLAMLVM
EEYILKNK

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g10976.t2 Gene3D G3DSA:3.30.710.10 Potassium Channel Kv1.1; Chain A 2 154 0.000
2 g10976.t2 PANTHER PTHR24413:SF213 FI01029P-RELATED 6 182 0.000
3 g10976.t2 PANTHER PTHR24413 SPECKLE-TYPE POZ PROTEIN 6 182 0.000
1 g10976.t2 Pfam PF00651 BTB/POZ domain 18 122 0.000
7 g10976.t2 ProSiteProfiles PS50097 BTB domain profile. 28 94 13.943
5 g10976.t2 SMART SM00225 BTB_4 28 124 0.000
4 g10976.t2 SUPERFAMILY SSF54695 POZ domain 14 122 0.000

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005515 protein binding MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values