General information for g10976.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10976 is located on chr_1: 13107425..13109925 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10976 | g10976.t4 | isoform | g10976.t4 | 13106855 | 13108047 |
| chr_1 | g10976 | g10976.t4 | exon | g10976.t4.exon1 | 13106855 | 13106857 |
| chr_1 | g10976 | g10976.t4 | exon | g10976.t4.exon2 | 13106924 | 13107012 |
| chr_1 | g10976 | g10976.t4 | exon | g10976.t4.exon3 | 13107065 | 13107268 |
| chr_1 | g10976 | g10976.t4 | exon | g10976.t4.exon4 | 13107400 | 13108047 |
| chr_1 | g10976 | g10976.t4 | cds | g10976.t4.CDS1 | 13107426 | 13107890 |
| chr_1 | g10976 | g10976.t4 | TTS | g10976.t4 | 13108157 | 13108157 |
| chr_1 | g10976 | g10976.t4 | TSS | g10976.t4 | NA | NA |
Sequences
>g10976.t4 Gene=g10976 Length=944
ATGGAAAATAATTTTGAGTTGATTATTCCATCTTATAAGTACAATTTTGGATCTCAAAAT
AAAAATGTATTCAAAAATGAATATGGCACATGGACCATATATATTTTTTCATCGCACAAT
TGCAGCCTTAATGGCATAGTAATTCTTGATCCAGTTTTTGATCAAAAAAGACTTGATTAT
AAGCAAATTAAAATTGATGTTGAATGCATAAATCCAGATGGTCATAATTCTTTTGTTATT
GCTAAACATCTTGAGAAAGCTATTTTTACGTTTGGACCAACTGACAGTCAATGTAACAAT
TGATGTTTTTTTTCAGATCACGATGCCAGAAATTTCAAATGCTGAAGAAAAGGAAACTGG
TGTAAAAAGCCATTTAAAATCATTGTTTGACTCTAAAAAGGATGCTGATATCACAATCAA
AGTAGAAGATGAAGAGATCAAAGTTCATAAAGTTATTTTGAAACGTTCGGAAGTCTTTGC
AAAATTATTAAGTGACACAGAAAATGAAACTGAGAGTGATATCATAGAATTGAAGGATAT
CAAACATGAAGTAATCGTTGAAATGTGCCGATATCTGTATTACGATGAAATTCCAAAAAT
CAAAATATTAGCTCTTCCTCTGTTAGTTGCTGCGGGCAAATATTCAATCGATGACTTGGC
TGAGAAATGTGAGAAGTATTTAATGACAAACATAACTTTTGAAAACTATTATGATGTTTT
AACAACTGCTTATGAACTTCAAAAGGAAGATTTGCGCAAAGTTGCAGCTGATTTTGTTAT
TAAGTAAGCTATTTCAAAATTTATGTAGTACATTCTTAAATTTGTCCTTAAATTTCAGGA
ACAACGAGTCTATTTTCTCGTCTGATATGTGGAATAAATTGAAGATAGAACATGCACAAC
TTGCTATGCTTGTCATGGAAGAATATATATTGAAGAACAAATAA
>g10976.t4 Gene=g10976 Length=154
MPEISNAEEKETGVKSHLKSLFDSKKDADITIKVEDEEIKVHKVILKRSEVFAKLLSDTE
NETESDIIELKDIKHEVIVEMCRYLYYDEIPKIKILALPLLVAAGKYSIDDLAEKCEKYL
MTNITFENYYDVLTTAYELQKEDLRKVAADFVIK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g10976.t4 | Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 2 | 153 | 0.000 |
| 2 | g10976.t4 | PANTHER | PTHR24413:SF213 | FI01029P-RELATED | 5 | 152 | 0.000 |
| 3 | g10976.t4 | PANTHER | PTHR24413 | SPECKLE-TYPE POZ PROTEIN | 5 | 152 | 0.000 |
| 1 | g10976.t4 | Pfam | PF00651 | BTB/POZ domain | 18 | 122 | 0.000 |
| 7 | g10976.t4 | ProSiteProfiles | PS50097 | BTB domain profile. | 28 | 94 | 13.943 |
| 5 | g10976.t4 | SMART | SM00225 | BTB_4 | 28 | 124 | 0.000 |
| 4 | g10976.t4 | SUPERFAMILY | SSF54695 | POZ domain | 14 | 122 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005515 | protein binding | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
