General information for g10979.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g10979 is located on chr_1: 13113311..13114703 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10979 | g10979.t3 | isoform | g10979.t3 | 13110276 | 13114318 |
| chr_1 | g10979 | g10979.t3 | exon | g10979.t3.exon1 | 13110276 | 13110280 |
| chr_1 | g10979 | g10979.t3 | cds | g10979.t3.CDS1 | 13110276 | 13110280 |
| chr_1 | g10979 | g10979.t3 | exon | g10979.t3.exon2 | 13113242 | 13114318 |
| chr_1 | g10979 | g10979.t3 | cds | g10979.t3.CDS2 | 13113242 | 13113764 |
| chr_1 | g10979 | g10979.t3 | TSS | g10979.t3 | 13114799 | 13114799 |
| chr_1 | g10979 | g10979.t3 | TTS | g10979.t3 | NA | NA |
Sequences
>g10979.t3 Gene=g10979 Length=1082
GGTAAGTGTTGATAAATCATTTAATAATTTATAATTTTTTATTGATTGATATTTTATTTA
TTGACAGTTTTGTGACTTTTGCTGATCCTGAGAATGTAAAGCGCGCTCTTGACAATTGCC
CTCATAGTTTGGACGGAAGGACGATCGATCCAAAACCATGTAATCCTCGCTCGATGCATA
AACCGAAGCGAACTAATGCTGGGTATCCGAAAGTCTTTCTCGGTGGTTTGCCTGCGAACG
TTACCGAGTCCGATTTGAGAGCATATTTCTCTCGTTATGGACAGGTAATGGAAGTGGTCA
TAATGTACGATCAAGAGAAAAAGAAGAGTCGTGGTTTTGGTTTTCTATCGGTAAGTAATT
AATGATTGTAGTATTAGTAATATTTATGACTCATAATTTACGTCACATTTTCTATTTTTT
CCCTTTTTCTATTCGATTATGTAAAGTTTGATACTGAAGCATCTGTGGATAGAGCTTGTG
CAGATCACTTCATTAATCTTAATGGTAAGCAAGTTGAAATTAAGAAAGCTGAACCAAGAG
ATGGTTCAAATCATATGATGCAAATGGATCCAAGTCAATCGATTGGAGCATCGCATTGGG
GAGGGCCAATGATGAGTGGAAATGGACCAATGATGGGACCGATTAGTGTTCCAAATTTGG
CAGGAAATACTGGCTTCAATTATAATTATGGATCATCAAATCCTTCAGCTAATCCCAACT
TTGGATGGCCTCAACAATGGGGTAATACGGGAAATTACGGAGTTCCTCATCAAGCTCAAC
AATCGGCTCAAGGCTACGGAGCTGCAGCTGCTTATGATTATAATGGTCCAATCGGATATA
ACTCGACACCAAGCAGTTATGCAGCAGCTAATGGTAACAATTGGAATTCTTGGAATCCAA
ACATTACAAACATCGCCCCAAATACTGGATCATCATCAGGAGAACTTCAATATCGACCAC
AATCTGGGCCAAATATGCATTCAGGTCCACCACCGCCGACATCAGGAAGTCTCTCAAAAG
CAGGCTCTGAATACAACGGAGCCGCGGCATATAATGGTGCAGCATACACAAATTACTTTA
TC
>g10979.t3 Gene=g10979 Length=176
MMQMDPSQSIGASHWGGPMMSGNGPMMGPISVPNLAGNTGFNYNYGSSNPSANPNFGWPQ
QWGNTGNYGVPHQAQQSAQGYGAAAAYDYNGPIGYNSTPSSYAAANGNNWNSWNPNITNI
APNTGSSSGELQYRPQSGPNMHSGPPPPTSGSLSKAGSEYNGAAAYNGAAYTNYFI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g10979.t3 | MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 155 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
