Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10979 g10979.t4 isoform g10979.t4 13110276 13114703
chr_1 g10979 g10979.t4 exon g10979.t4.exon1 13110276 13110295
chr_1 g10979 g10979.t4 cds g10979.t4.CDS1 13110291 13110295
chr_1 g10979 g10979.t4 exon g10979.t4.exon2 13113263 13113910
chr_1 g10979 g10979.t4 cds g10979.t4.CDS2 13113263 13113764
chr_1 g10979 g10979.t4 exon g10979.t4.exon3 13113969 13114703
chr_1 g10979 g10979.t4 TSS g10979.t4 13114799 13114799
chr_1 g10979 g10979.t4 TTS g10979.t4 NA NA

Sequences

>g10979.t4 Gene=g10979 Length=1403
ATGATTTCTCAAAAGGATAACGAAGAAGGGAAATTGTTTGTAGGCGGTAAGTGACTGGAT
TTTATTTATTTTTTTGCTATTTTACGGAAGCGCTTCACTATGATGCATTGTGGCGTTTTG
GCTGAGTACGGAAAAAGAGTAACCTTTCTCTCTCTCAAACAAAAAAAGAATAAGAAAGTG
TTTTTGTTTATTTTGGTCACACTGCAATTGCCGCGATATCATGAATTTATGTGATAAACA
CTAATCGCATTATTTTAAATCTATTTCTAAGGCCTGAGCTGGGATACTCAGTCGGATAGT
CTACAACGTTATTTTAGCCGCTATGGTGAAGTTATTGATTGTGTTGTAATGAAAAACAAT
GAAACAGGCAGATCAAGAGGATTCGGGTAAGTGTTGATAAATCATTTAATAATTTATAAT
TTTTTATTGATTGATATTTTATTTATTGACAGTTTTGTGACTTTTGCTGATCCTGAGAAT
GTAAAGCGCGCTCTTGACAATTGCCCTCATAGTTTGGACGGAAGGACGATCGATCCAAAA
CCATGTAATCCTCGCTCGATGCATAAACCGAAGCGAACTAATGCTGGGTATCCGAAAGTC
TTTCTCGGTGGTTTGCCTGCGAACGTTACCGAGTCCGATTTGAGAGCATATTTCTCTCGT
TATGGACAGGTAATGGAAGTGGTCATAATGTACGATCAAGAGAAAAAGAAGAGTCGTGGT
TTTGGTTTTCTATCGTTTCTATTTTTTCCCTTTTTCTATTCGATTATGTAAAGTTTGATA
CTGAAGCATCTGTGGATAGAGCTTGTGCAGATCACTTCATTAATCTTAATGGTAAGCAAG
TTGAAATTAAGAAAGCTGAACCAAGAGATGGTTCAAATCATATGATGCAAATGGATCCAA
GTCAATCGATTGGAGCATCGCATTGGGGAGGGCCAATGATGAGTGGAAATGGACCAATGA
TGGGACCGATTAGTGTTCCAAATTTGGCAGGAAATACTGGCTTCAATTATAATTATGGAT
CATCAAATCCTTCAGCTAATCCCAACTTTGGATGGCCTCAACAATGGGGTAATACGGGAA
ATTACGGAGTTCCTCATCAAGCTCAACAATCGGCTCAAGGCTACGGAGCTGCAGCTGCTT
ATGATTATAATGGTCCAATCGGATATAACTCGACACCAAGCAGTTATGCAGCAGCTAATG
GTAACAATTGGAATTCTTGGAATCCAAACATTACAAACATCGCCCCAAATACTGGATCAT
CATCAGGAGAACTTCAATATCGACCACAATCTGGGCCAAATATGCATTCAGGTCCACCAC
CGCCGACATCAGGAAGTCTCTCAAAAGCAGGCTCTGAATACAACGGAGCCGCGGCATATA
ATGAATAAAAACATACCTTTATC

>g10979.t4 Gene=g10979 Length=168
MMQMDPSQSIGASHWGGPMMSGNGPMMGPISVPNLAGNTGFNYNYGSSNPSANPNFGWPQ
QWGNTGNYGVPHQAQQSAQGYGAAAAYDYNGPIGYNSTPSSYAAANGNNWNSWNPNITNI
APNTGSSSGELQYRPQSGPNMHSGPPPPTSGSLSKAGSEYNGAAAYNE

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g10979.t4 MobiDBLite mobidb-lite consensus disorder prediction 121 168 -
g10979.t4 MobiDBLite mobidb-lite consensus disorder prediction 121 139 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed