General information for g10980.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Dihydropyrimidinase-related protein 2.
Parent gene
- The parent gene g10980 is located on chr_1: 13116202..13117650 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10980 | g10980.t9 | isoform | g10980.t9 | 13116202 | 13116670 |
| chr_1 | g10980 | g10980.t9 | exon | g10980.t9.exon1 | 13116202 | 13116670 |
| chr_1 | g10980 | g10980.t9 | cds | g10980.t9.CDS1 | 13116204 | 13116557 |
| chr_1 | g10980 | g10980.t9 | TSS | g10980.t9 | NA | NA |
| chr_1 | g10980 | g10980.t9 | TTS | g10980.t9 | NA | NA |
Sequences
>g10980.t9 Gene=g10980 Length=469
GCTGTGCAATTACAAGGTGAGTAAAAGAAATCTTTTATTTTTGACATAATTTATATTACT
CTCATCACTCTACCATTGTTCTTTATAGCTGGAATAAATCCGTTAGCGATGAAATGAAAA
CGCTATGTGAAGAGTTTGGAATAAATTGCTTCGTTGTGTTTATGGCATTCAAAGATCAAT
ATCAGTTGAGTGATTCCGATTTATATGAGATTTTTGAAAGATGCAATGAGCTTGGTGCAT
TATGTCAAGTGCATGCTGAGAATGGTGATATCATTGCGAAAAATGTTGAGAAACTTGTTG
CAAAAGGTCAAACAAGTGCAGAAGCACATGATCTCTCAAGAAGTGCAGAAGTTGAAGCGG
AAGCAGTTAATCGTGCATGTGTAATCGCTCATCAAACTGATTCACCAATTTATATCACCA
AAGTTTCTTCCAAATTGGCTGCCGATCAAATTCAACTTGCAAAACGCAG
>g10980.t9 Gene=g10980 Length=118
MKTLCEEFGINCFVVFMAFKDQYQLSDSDLYEIFERCNELGALCQVHAENGDIIAKNVEK
LVAKGQTSAEAHDLSRSAEVEAEAVNRACVIAHQTDSPIYITKVSSKLAADQIQLAKR
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g10980.t9 | Gene3D | G3DSA:3.20.20.140 | - | 1 | 118 | 0 |
| 1 | g10980.t9 | PANTHER | PTHR11647:SF55 | DIHYDROPYRIMIDINASE-RELATED PROTEIN 4 | 2 | 118 | 0 |
| 2 | g10980.t9 | PANTHER | PTHR11647 | HYDRANTOINASE/DIHYDROPYRIMIDINASE FAMILY MEMBER | 2 | 118 | 0 |
| 3 | g10980.t9 | SUPERFAMILY | SSF51556 | Metallo-dependent hydrolases | 5 | 118 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0070997 | neuron death | BP |
| GO:0097485 | neuron projection guidance | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
