General information for g10982.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Probable multidrug resistance-associated protein lethal(2)03659.
Parent gene
- The parent gene g10982 is located on chr_1: 13151353..13158269 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g10982 | g10982.t1 | TSS | g10982.t1 | 13150897 | 13150897 |
| chr_1 | g10982 | g10982.t1 | isoform | g10982.t1 | 13151353 | 13158269 |
| chr_1 | g10982 | g10982.t1 | exon | g10982.t1.exon1 | 13151353 | 13151537 |
| chr_1 | g10982 | g10982.t1 | cds | g10982.t1.CDS1 | 13151353 | 13151537 |
| chr_1 | g10982 | g10982.t1 | exon | g10982.t1.exon2 | 13151884 | 13154300 |
| chr_1 | g10982 | g10982.t1 | cds | g10982.t1.CDS2 | 13151884 | 13154300 |
| chr_1 | g10982 | g10982.t1 | exon | g10982.t1.exon3 | 13154358 | 13155485 |
| chr_1 | g10982 | g10982.t1 | cds | g10982.t1.CDS3 | 13154358 | 13155485 |
| chr_1 | g10982 | g10982.t1 | exon | g10982.t1.exon4 | 13155643 | 13158269 |
| chr_1 | g10982 | g10982.t1 | cds | g10982.t1.CDS4 | 13155643 | 13158269 |
| chr_1 | g10982 | g10982.t1 | TTS | g10982.t1 | NA | NA |
Sequences
>g10982.t1 Gene=g10982 Length=6357
ATGGAGCAAAGTAATCAGAAAGTAGCAGACAATCCACGCGAGAAGGCCAATTTTGTATCA
ATTGTCACTTTCTTCTGGACGATACCACTTTTTCGAAAAGGATATAAGAAAGTGCTTGAA
ATTGAAGATCTTTATCGACCATTGAAAGTTGATGAGAGTGAAAATTTGGGAGATAGATTA
GAACAAAATTGGACAAAACAACTCAATGGAGCAAAGAAACCGTCACTCATGCGAGCTTTA
TCGCGCACATTTTGGAAAGAGTATATGATACTTGGACTTTATGCATTCACCACCGATATT
GTAATTCGACTTTCATTGCCCTTTTTTCTTGGACGACTTCTCGATTATTTTAGTCCAAAG
TCAACATTAACGAAAGATTATGCATATTTTTATGCTAGCATGCTCGTGCTGATTAATATT
GGCGGTGCTCTATTTGTCAATCAATTTATCCTTGGAAGTTTTTCAAATGGGATGAAAGTG
CGTCTTGCAACTTGTTCTCTAATTTATCGAAAAGCATTGAAATTGTCGACAACAGCTTTA
GGAAACACATCAGTAGGAAAAGTTGTAAATTTACTCAGTAATGATGTTTCTCGCTTCGAC
ATTGTGTCTGTTTTTATACATGCAATGTGGCTAGCGCCACTTCTAACGATCATTGTTGGA
ATTTTATTATATCAAGAGGTTGGCACTGCAGGCCTTGTTGGAATTTTAGTTATTGGAATA
GTTACACCACTTCAATCGTACACTGGCAAATTATCTTCAAAATTCAGACTTCAAACAGCA
ATTCGAACTGATGAGAGAGTTCGATTGATGGATGAGATAATAAATGGCATTCAAGTGATT
AAATTGTATGCTTGGGAAAAATCTTTCAAAAAGCTTATTCAAAATGCACGTATGAAGGAA
TTAAAAGTTATCAAAAAATCTTCATACATTCGTGCACTTTATATGACTTTCATGTTGTTT
ACAACTCGATCTGCACTTTATTGTACAATGATGGCAATTGTGGTTTTAGGCGATGAATTA
ACTGCATCAAAAGTATTTGTCATATCTTCATATTTTCAAATCATCTCATCAGTTATGTCA
CAAATGTTTGTGCGTGGGATTGCTGAAATTGCTGAAGCTTTTGTTGGAATTAAAAGACTT
CAAACTTTCCTCGAATATGATGAAAAAGAGGAAAAAGAAAATATACAAATGATTCAAGGA
AATGCGCTGAATGATATAGGAAAAACAAAAGACAAGGCAGAGAATCATATGAATCATATT
AATAGAAAATCTGAAGTATCTTCAAATATCGTCTTATCAATGCAAAATGTTTGTTGTAGA
TGGAAGAGCGTTGAAGAAAACTTGAAACACAATGATAAGAAGAACAAAGAAAGTGATAAT
AATCAAATTGATTCCGCAAACGAGTACAAATTAACTCTCAGTGATATATCATTGGAAATA
AAAAGAGGATTATTAGTTGGAGTGCTTGGTCACGTGGGAAGTGGAAAAAGTAGTCTTTTA
CAAACAATTTTACGTGAATTACCAATAATATCGGGGAAAATGCATGTGAATGGCACTTTA
TCATTTGCTTCACAAGAGCCTTGGGTCTTTTCTGGGTCAATAAGACAAAATATTCTTTTT
GGTAGTGAAATGAATAAAGAGCGCTATGATCGAGTTGTTGCAGCATGTGCATTAAAAAAA
GATTTCGAAATGTTTCCACATGGTGATCATACTTTGATTGGTGAAAGAGGCAGTTCACTC
TCAGGTGGTCAAAAAGCAAGATTAAGTTTAGCGAGAAGTCTTTATAGAGAAGCTCAAATT
TATCTACTTGATGATCCACTATCAGCTGTTGATGCGCACGTTGGCAAGCACTTGTTTGAA
GAGTGTTTAGCGCCACGTGGTTTTCTTGGCAAACAACATGCTACTCGAATTCTCGTCACA
CATCAAGTACATTTTCTAAAGAATGCCGACTGGTTGATAATAATGAAAGATGGAAAAATT
GAACAACAAGGATATGCAAGTGATCTAATGAAAGATGAAACAAATATTTTAAAAATTGCA
GAAGAAGCCGAAGAACAAGATACAATCAGACGACAATCGTTTTCACGGTCATTGTCAGCA
CGGTCGTCAAACTCGATTAATTCTAATTCATCCAAAGAGACTGGAACAAATGATGATGAT
GATGAGACAAGAAGTGAGCATGAAGTTCAAAAGAATGTTGAGGAAATGTCAAAAGGAAAA
GTCAAAGGAAATGTGACATTAAATTATCTTAAAGCAGGTGGAGATGGATGCAAATTGTCA
TTTGCTTTGTTTCTTTTTCTTTTAACACAAGCAATTGCATCAACATCAGATATGTTTGTT
GGTTTTTGGACAAATCAAGAAGAATTGCGACAATATTATTCATCGATAAATGCTACAGAA
TCAAATGAAAATGCAACATTAATATTAGAGGACACAACGATGATGACTACTACTGACGTA
AATGAAGTGAATTTACTGCCAAGTGATATTTTAGTTTACATTGGAGGAGTTTTAATTGTT
GCTTTATTTATCATTGCAATAGTACGATCTATCGTATATTATTCAATTACTCAAGTAAAC
AAAATATTCACTTTAAACCACATGGCTATGAATCCACACAAACCAACAACTAAAAAGCGT
AATAGAAAGAAATCACCTGGAAGCAGCGGCCTAAATTCGCCATCAAAGCAGAATTCGAAG
ATTAGAAAAATTGCAAGCTCTGAAAACGTGGATGGAAGAAATTTTTCTTCTTCAGGCTCA
TTTCAAGATGACCTTAGTGACAATATGAGCTCAATAAGCTCAAATCATATCCACATCGGT
GTATCCTCTCAACAAAAACAATCTAAATGCAAACCAGTGTTCATTGAATCAGGATATCAA
GTGATTTCTAACCTCATCAAAAATTGCTCATTTCAAACAAATCCAACACTGAAGATCATA
AACAACAACAAAGTTTCAGTTTTAACTTCAAGTGAAAAGGACAAAGAGGCCCTAATCAAA
AAGCTTAGTGATCAGAAATTTCAATTCTACACATTTGCAGAAAAGGGTAAGCGAAATGAT
ATGTTCGTACTCAAAGGTTTTTATCAAACATCTAAGGAAATATTACTGAATCTTCTAAAA
GACAGTAAAATTCCAGCGATTTTCGTTAAGCAAATCTCGTACAATGCTGACAGACCTATT
TACATTGTACAATTTGAATATAACACAACCAACATTCATCAACTCAATTCCAGTTATAGA
GTAATTGATAGCATTTATGTCAGATGGGAACTACTGGACAAGAAAAAGAAAACTCATGTA
CAATGTTCCAAATGCAGACGATGGGGCCACACCCAAGCAAACTGTGGATACAAGCCAAGA
TGCATTAAATGCATCAATGACCACGAACCTGGTAAATGTCCACGCACATCAAGAATAGAC
ACTGAAGATTGCAAAGTAACTTGTGTGAACTGCAATGGCAACCACCCAGCAAACAGTAGA
ATCTGTCCTGAATTCACAAAATATCTGATGAACATCGAAAATTCAAAACCAAAGAAGCTC
ATTCGTCAATCGAGCTTTGCAAATCCTGTGAATACTGAAATCGATTCAAGCTGGCCGAAA
CTACCTGCAACTGAACCTAGTGGTTCAAGAGTCAACCCAAGATTTAGAGCATCTTACGCT
GAAGCTGTCAATGCAAAGAACAAGCAGAGATCTGTAAGTTTTAATTCTAATGTTACGAGT
GATATTGATTGCAAAAAGCCTGAGCTTGATCGTTTTGTTGTACAACACAACATAGATATT
TGTTTACTATCAGAAACTTGGTTAAAAGAAGATTCTCGATTTTTCATGTCTGGCTATAAT
TTACATTCCGTCTTTCGCGAACACGGCGGTGTTTCAATTCTCATAAAAAATACCATTCCT
GTACTCAAGATCGATAATATAGTTTATTCTTATGCAGAAGCTATAATCATTAGCATAGAA
AGTCATATAGGTCTAGTTCAAATAGCTTCAATCTACATTTCGCCGGCAGCAAACAGATCT
CAATCAGCTATTTTCTTTGAACGGTTGCTTAAATATCCAGGCCAGCTCATTATAGCTGGT
GATGTTAATGCGAAACATCAATCCTGGAATAACACTAACAACACTCATAAAGGCATTGAC
CTTTTTAATATTGCGTCCAGAAATAACTGTACCATTCATCCACCTGATTCTCCAACCCTT
TATTCATGTCGAGGTTCAATTTCAACAGTAGATTTACTTATCACTAAAGCCATTAGTGGC
ATTTCTAGTCCCCTAACTCACAACGATCTCTCGTCTGATCATATGCCTATTCTCTTTTCT
TTTTCAAAAATCTTATCTTTAGACGAACGTCGTATCTTCAATTGGAAGAAAGCCAATTGG
AAAAAGTTTAAAGATATTGTAAATACCAATTCAGTAGAGCTAACAAATCGTCCTATTAAT
TCTACAGATGATATAGATAATATCATCCAATCTCTCACAGAAAACATTATTCAAGCTTCA
ATAGTCTCGATTCCTAAGAAGAAACCTTACAGATTTAGATATCCCTTTTCTTCTCGCCTC
GATCTTCTCTGTAAAGAACGAACACGGCTGAGAAATAGATATAAGGTTACTCTTCGTCAT
GAATACAAGTCATTAATCAATCAATTAAACAGGTTGATTAAATTTGAAACTTCGAAAATC
AACAAAGAATCCTTCGAGTCTCGCTTAGCATCACTCAAAACTGATGACAATACAGCTTTT
AGTTTCGTTAAAGCACTCAGAAAATCTAAAAATACTTTACCACCTCTTTGCGTCAACGGA
AATTTATCCTATTCGAATATTGAAAAGGCTAATGTCTTAGCTAAAAATTTTCTTTCCAAT
CATCTAAATACATGCAATCAAATCTCTCCTCATGAGCAATTAGTAAATGATACAGTTATT
CATTTCAGATCACAACAACATAATTGTGATTTCTCTACCACTCCCGAAAATATCACTGAA
ATTATCCAAAATTTAAAACTAAGAAAAGCAGCCGGTTTTGACAATATTAAAACTCAATTT
TTAAAAAACTTACCACAGTCTTCAATTCAACTCATTTCAAATATTTTCAATCACTGTCTC
AAATTTGGTTACTTTCCACAACAATGGAAACATGCAAAAATAATCGCCTTACCCAAGAAA
GATAAAGATTCTAGTAATCCCAACAATTTCAGACCTATCTCATTACTTTCCACAATTGGA
AAACTCTTTGAAAGAACAATCTTAAATTTTCTCATTCGACATGAAGTCGAGAACAATTTG
TTTATTAACCAACAGTTTGGTTTTCGTTCTAAACATTCAACTACTCTTCAAATAATAAGA
ATAGTTGAATCAGCTTCTATCGGTTTCAATCACAATCGGAGTACAGGAATGGTCCTACTG
GACATTCAAAAGGCGTTCGATTCTGTTTGGTTGAATGGCCTTGTTTTTAAACTAATTAAA
CTCAAATTTCCATCTGGACTCATTAAAATCATTGACTCATTCTTATTCAATCGCACCGCA
CAAGTCGACGTTAATCAATGTCTTTCAGATACATTTTCTATACCTGCAGGTGTCCCTCAG
GGATCTGCACTTTCACCTTTTCTATTTAATCTCTTCATTAACGACTTGCCTAAACTTAAA
AAAGGTGAACTAGCAGCTTTTGCTGATGACTTAGCTATATTCTACACCATTAGATCAAAA
AATCCAAATACTTTTAAAAAAGCCATTTTGAATGATCTCAGTTATTTATCCAAATTTTAC
GGCGACTGGAAAATCAGCTTGAACAAGGATAAAACTGAATTCATTATTTTTACGAGGGCA
TACTCTTTAAGAAACAAACTAGCTAACGATTCAATTTCCTTCCAAAACAAACAATTCAAA
TGGTTAAATCAAGTCAAATATCTAGGTGTGATACTTGATCAAAGGCTTAACTTCAATGCA
CACATACAGCATACTATATCCAAAGCTAAAAAGGCCCTATTTAGTATTTATTCCATTTTC
AAGAACAGTAATCCTGTTCCTGCATCCACCAAAGTAAATCTCTACAAGTCTTTAATAAGA
CCAATCTTATCTTATGCAGCGCCAGTATTCATCAATTGTCCAAAAACTTATTTGAAAAAA
TTGCAAGTTGTGCAAAACATGGCACTTAGAATGTGCACTAACAGTTCGCGATATACCAGA
CTCACTGATCTTCACGAATTAGCCAGAACGCCATTTGTACAGGACTTTTTCTTAAAACTA
ACCAACCAACTCTATTCTCGAACGCAATTCCACGACAACCCACTCATTAAAATTCTAGGA
GATTATAACAATCGCATTTCAAATGTTAGAATCAAACACAACCTTCCCAAACCTTAG
>g10982.t1 Gene=g10982 Length=2118
MEQSNQKVADNPREKANFVSIVTFFWTIPLFRKGYKKVLEIEDLYRPLKVDESENLGDRL
EQNWTKQLNGAKKPSLMRALSRTFWKEYMILGLYAFTTDIVIRLSLPFFLGRLLDYFSPK
STLTKDYAYFYASMLVLINIGGALFVNQFILGSFSNGMKVRLATCSLIYRKALKLSTTAL
GNTSVGKVVNLLSNDVSRFDIVSVFIHAMWLAPLLTIIVGILLYQEVGTAGLVGILVIGI
VTPLQSYTGKLSSKFRLQTAIRTDERVRLMDEIINGIQVIKLYAWEKSFKKLIQNARMKE
LKVIKKSSYIRALYMTFMLFTTRSALYCTMMAIVVLGDELTASKVFVISSYFQIISSVMS
QMFVRGIAEIAEAFVGIKRLQTFLEYDEKEEKENIQMIQGNALNDIGKTKDKAENHMNHI
NRKSEVSSNIVLSMQNVCCRWKSVEENLKHNDKKNKESDNNQIDSANEYKLTLSDISLEI
KRGLLVGVLGHVGSGKSSLLQTILRELPIISGKMHVNGTLSFASQEPWVFSGSIRQNILF
GSEMNKERYDRVVAACALKKDFEMFPHGDHTLIGERGSSLSGGQKARLSLARSLYREAQI
YLLDDPLSAVDAHVGKHLFEECLAPRGFLGKQHATRILVTHQVHFLKNADWLIIMKDGKI
EQQGYASDLMKDETNILKIAEEAEEQDTIRRQSFSRSLSARSSNSINSNSSKETGTNDDD
DETRSEHEVQKNVEEMSKGKVKGNVTLNYLKAGGDGCKLSFALFLFLLTQAIASTSDMFV
GFWTNQEELRQYYSSINATESNENATLILEDTTMMTTTDVNEVNLLPSDILVYIGGVLIV
ALFIIAIVRSIVYYSITQVNKIFTLNHMAMNPHKPTTKKRNRKKSPGSSGLNSPSKQNSK
IRKIASSENVDGRNFSSSGSFQDDLSDNMSSISSNHIHIGVSSQQKQSKCKPVFIESGYQ
VISNLIKNCSFQTNPTLKIINNNKVSVLTSSEKDKEALIKKLSDQKFQFYTFAEKGKRND
MFVLKGFYQTSKEILLNLLKDSKIPAIFVKQISYNADRPIYIVQFEYNTTNIHQLNSSYR
VIDSIYVRWELLDKKKKTHVQCSKCRRWGHTQANCGYKPRCIKCINDHEPGKCPRTSRID
TEDCKVTCVNCNGNHPANSRICPEFTKYLMNIENSKPKKLIRQSSFANPVNTEIDSSWPK
LPATEPSGSRVNPRFRASYAEAVNAKNKQRSVSFNSNVTSDIDCKKPELDRFVVQHNIDI
CLLSETWLKEDSRFFMSGYNLHSVFREHGGVSILIKNTIPVLKIDNIVYSYAEAIIISIE
SHIGLVQIASIYISPAANRSQSAIFFERLLKYPGQLIIAGDVNAKHQSWNNTNNTHKGID
LFNIASRNNCTIHPPDSPTLYSCRGSISTVDLLITKAISGISSPLTHNDLSSDHMPILFS
FSKILSLDERRIFNWKKANWKKFKDIVNTNSVELTNRPINSTDDIDNIIQSLTENIIQAS
IVSIPKKKPYRFRYPFSSRLDLLCKERTRLRNRYKVTLRHEYKSLINQLNRLIKFETSKI
NKESFESRLASLKTDDNTAFSFVKALRKSKNTLPPLCVNGNLSYSNIEKANVLAKNFLSN
HLNTCNQISPHEQLVNDTVIHFRSQQHNCDFSTTPENITEIIQNLKLRKAAGFDNIKTQF
LKNLPQSSIQLISNIFNHCLKFGYFPQQWKHAKIIALPKKDKDSSNPNNFRPISLLSTIG
KLFERTILNFLIRHEVENNLFINQQFGFRSKHSTTLQIIRIVESASIGFNHNRSTGMVLL
DIQKAFDSVWLNGLVFKLIKLKFPSGLIKIIDSFLFNRTAQVDVNQCLSDTFSIPAGVPQ
GSALSPFLFNLFINDLPKLKKGELAAFADDLAIFYTIRSKNPNTFKKAILNDLSYLSKFY
GDWKISLNKDKTEFIIFTRAYSLRNKLANDSISFQNKQFKWLNQVKYLGVILDQRLNFNA
HIQHTISKAKKALFSIYSIFKNSNPVPASTKVNLYKSLIRPILSYAAPVFINCPKTYLKK
LQVVQNMALRMCTNSSRYTRLTDLHELARTPFVQDFFLKLTNQLYSRTQFHDNPLIKILG
DYNNRISNVRIKHNLPKP
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 29 | g10982.t1 | CDD | cd18579 | ABC_6TM_ABCC_D1 | 90 | 380 | 2.24258E-104 |
| 31 | g10982.t1 | CDD | cd03250 | ABCC_MRP_domain1 | 432 | 659 | 3.20486E-105 |
| 30 | g10982.t1 | CDD | cd01650 | RT_nLTR_like | 1711 | 1972 | 6.17388E-45 |
| 13 | g10982.t1 | Gene3D | G3DSA:1.20.1560.10 | - | 77 | 387 | 2.0E-21 |
| 11 | g10982.t1 | Gene3D | G3DSA:3.40.50.300 | - | 426 | 704 | 3.1E-72 |
| 12 | g10982.t1 | Gene3D | G3DSA:3.60.10.10 | - | 1233 | 1442 | 1.9E-30 |
| 44 | g10982.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 688 | 737 | - |
| 43 | g10982.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 692 | 713 | - |
| 41 | g10982.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 714 | 737 | - |
| 42 | g10982.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 873 | 904 | - |
| 45 | g10982.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 886 | 904 | - |
| 5 | g10982.t1 | PANTHER | PTHR24223:SF360 | MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN LETHAL(2)03659-LIKE PROTEIN-RELATED | 1 | 857 | 0.0 |
| 6 | g10982.t1 | PANTHER | PTHR24223 | ATP-BINDING CASSETTE SUB-FAMILY C | 1 | 857 | 0.0 |
| 3 | g10982.t1 | Pfam | PF00664 | ABC transporter transmembrane region | 90 | 357 | 2.7E-28 |
| 4 | g10982.t1 | Pfam | PF00005 | ABC transporter | 473 | 607 | 4.5E-20 |
| 2 | g10982.t1 | Pfam | PF14529 | Endonuclease-reverse transcriptase | 1327 | 1437 | 1.1E-16 |
| 1 | g10982.t1 | Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1718 | 1972 | 6.8E-46 |
| 14 | g10982.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 1 | 87 | - |
| 23 | g10982.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 88 | 109 | - |
| 21 | g10982.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 110 | 128 | - |
| 28 | g10982.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 129 | 151 | - |
| 15 | g10982.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 152 | 200 | - |
| 26 | g10982.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 201 | 224 | - |
| 20 | g10982.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 225 | 229 | - |
| 25 | g10982.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 230 | 248 | - |
| 17 | g10982.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 249 | 311 | - |
| 27 | g10982.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 312 | 336 | - |
| 18 | g10982.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 337 | 760 | - |
| 24 | g10982.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 761 | 783 | - |
| 16 | g10982.t1 | Phobius | CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. | 784 | 829 | - |
| 22 | g10982.t1 | Phobius | TRANSMEMBRANE | Region of a membrane-bound protein predicted to be embedded in the membrane. | 830 | 856 | - |
| 19 | g10982.t1 | Phobius | NON_CYTOPLASMIC_DOMAIN | Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. | 857 | 2118 | - |
| 40 | g10982.t1 | ProSitePatterns | PS00211 | ABC transporters family signature. | 580 | 594 | - |
| 47 | g10982.t1 | ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 101 | 363 | 31.9 |
| 48 | g10982.t1 | ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 448 | 682 | 21.682 |
| 46 | g10982.t1 | ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 1698 | 1972 | 24.557 |
| 39 | g10982.t1 | SMART | SM00382 | AAA_5 | 482 | 661 | 1.9E-6 |
| 9 | g10982.t1 | SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 82 | 390 | 4.05E-34 |
| 10 | g10982.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 463 | 673 | 3.39E-50 |
| 8 | g10982.t1 | SUPERFAMILY | SSF56219 | DNase I-like | 1245 | 1442 | 7.92E-26 |
| 7 | g10982.t1 | SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1631 | 1939 | 1.6E-18 |
| 38 | g10982.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 88 | 110 | - |
| 36 | g10982.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 130 | 152 | - |
| 37 | g10982.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 201 | 223 | - |
| 33 | g10982.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 227 | 249 | - |
| 34 | g10982.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 312 | 334 | - |
| 32 | g10982.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 761 | 783 | - |
| 35 | g10982.t1 | TMHMM | TMhelix | Region of a membrane-bound protein predicted to be embedded in the membrane. | 831 | 853 | - |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0055085 | transmembrane transport | BP |
| GO:0005524 | ATP binding | MF |
| GO:0042626 | ATPase-coupled transmembrane transporter activity | MF |
| GO:0016021 | integral component of membrane | CC |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
