Gene loci information

Transcript annotation

  • This transcript has been annotated as hypothetical.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g10989 g10989.t4 isoform g10989.t4 13200006 13200633
chr_1 g10989 g10989.t4 exon g10989.t4.exon1 13200006 13200633
chr_1 g10989 g10989.t4 cds g10989.t4.CDS1 13200008 13200358
chr_1 g10989 g10989.t4 TSS g10989.t4 NA NA
chr_1 g10989 g10989.t4 TTS g10989.t4 NA NA

Sequences

>g10989.t4 Gene=g10989 Length=628
AATTAGCGGAAGAAAATAAACGAATAAAAGAAGAGATTAAGAAACTAGAGGAGCAAAATG
CAGCTTCACAAGTTTTGCAAGAACTCGTAGAGAGTCTTACACAAAATAAATTAGCAAGTG
CAACACAAATATCAGAATTGAGCAAACAAATTTCAGATAAAGACGTGTCAATTAAACAAC
TACAATCAAAATTTGATGAGCTCATTATAGAAAATGAAGCACTTAAGCGACAAACACAAA
GGCTAACAGACGAAAATGATTCTTTATTAGTCGACATGCAATCTATTGATTTTAAAAATG
AAGTCGATGATTTATCATTGAAAATTAAAACTTTAAATGAAGAATTATCAGAATTGAAGT
TGAAATATGATGATAAATGTAGCGAAAATTTGGAGTTAAAAGCTTCAATAGAATCTAACA
ATGCACCATCAGACGAAATTAAAATTCGTTATGACAAAACTCTTAAGAAAATGAAAGCAT
ATCGGGAAAAATTGTTTGAAATCTATGAACAGGCTAAAATTATAAAGAATGAAAAGGGTA
CTCTTTTGAAGATGACTAAAGAGTATGGAGAATATGTTAACAAATGGCAAAAAGATATTG
CTAATGCATCAACAAGACTTGTAATTCA

>g10989.t4 Gene=g10989 Length=117
MQSIDFKNEVDDLSLKIKTLNEELSELKLKYDDKCSENLELKASIESNNAPSDEIKIRYD
KTLKKMKAYREKLFEIYEQAKIIKNEKGTLLKMTKEYGEYVNKWQKDIANASTRLVI

Protein features from InterProScan

Transcript Database ID Name Start End E.value
g10989.t4 Coils Coil Coil 3 37 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

There are no GO annotations for this transcript.

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed