General information for g11019.t13
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative RAC serine/threonine-protein kinase.
Parent gene
- The parent gene g11019 is located on chr_1: 13430427..13431038 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11019 | g11019.t13 | TSS | g11019.t13 | 13426353 | 13426353 |
| chr_1 | g11019 | g11019.t13 | isoform | g11019.t13 | 13426526 | 13431038 |
| chr_1 | g11019 | g11019.t13 | exon | g11019.t13.exon1 | 13426526 | 13427912 |
| chr_1 | g11019 | g11019.t13 | cds | g11019.t13.CDS1 | 13427539 | 13427912 |
| chr_1 | g11019 | g11019.t13 | exon | g11019.t13.exon2 | 13428410 | 13428566 |
| chr_1 | g11019 | g11019.t13 | cds | g11019.t13.CDS2 | 13428410 | 13428566 |
| chr_1 | g11019 | g11019.t13 | exon | g11019.t13.exon3 | 13428616 | 13428828 |
| chr_1 | g11019 | g11019.t13 | cds | g11019.t13.CDS3 | 13428616 | 13428624 |
| chr_1 | g11019 | g11019.t13 | exon | g11019.t13.exon4 | 13428892 | 13429113 |
| chr_1 | g11019 | g11019.t13 | exon | g11019.t13.exon5 | 13429531 | 13429673 |
| chr_1 | g11019 | g11019.t13 | exon | g11019.t13.exon6 | 13429757 | 13429778 |
| chr_1 | g11019 | g11019.t13 | exon | g11019.t13.exon7 | 13429848 | 13430301 |
| chr_1 | g11019 | g11019.t13 | exon | g11019.t13.exon8 | 13430368 | 13431038 |
| chr_1 | g11019 | g11019.t13 | TTS | g11019.t13 | 13431308 | 13431308 |
Sequences
>g11019.t13 Gene=g11019 Length=3269
TCTCAAAAATGTTGTCATTGAGTGTTCACAGTGATAATTAATTGATAAGAGCTTCGGTGT
AATGTTAAAATAAGCTAGTAAATGTCAAAAAAGTGATCAGAAGCTAAAAATATGATGTTT
TCATCTTTTGCGTATTTCATTCGAAAAGCAGTCAGTCATCATACATGCATGTATTATTTT
ACTACCGACTACTCGTTATTTTCATTTTTTCACTCTCTCACTCTTTCTCACTGTCTCTCG
GTTATGAAAGTTTGTATTGAGTGAAAAAATGTAAATAATCTCACATTTTTGTCATGCCTT
TCTCTTTGCAACAAATCATGGTGTATTATTGTAATTTTATTTTCTTCTCTCAATTTGTTC
GGATAGAAATAGAGTTTTAAAAAGAAAGAAAATATTAATTATTTTGAATAGAAAAAGATT
TTAAATACTTGTGCAAAAAAAGAGAGTAAGAAGTAAAGAGGCAAGCGAGAATTTCATTTT
TTTTTCTTTTTACTCCATACACCCAATCGTAGTCATCGTTGCTGCTTGTACTTGTCTGAA
AATGTGAATGACTTGAGAACATTTTTTTTTGCGAAAATGAAAATAAAATAAAAATACACA
CACGTTTGTGATTTATAGAGGAAAAAAGAAAGATAGATAGATAGTTGATGATGATGATGA
AAAAAAACATTCAGAGAGCAGACTAAAAAAATTTTATATGTGTGTCTACGATATTCTATA
GAATTGAGTATTATTTTTTTTTTTTAAAAAAAAATTTCATTATAATAATGTTGACTAACA
AAACACATATCTCTAAACTTTTAATTTTTGTTCTAGGAACTTTCCATCAAAACAATAATA
TTGTAATTAATTGTGTATAAAGAAGGAAATGTAAAATAATTGTTGAAAGAAAAGAAACTT
ATTGATTAAAAAGAAATATATTCCACAGCATATTGAGAAATTAATATTATTTGCATCATC
ATCAATAGTTTGTTTTGGGCAAATAAGAAGATAAAAAAAAAAGTTGAGGAAAAATGTCAC
TTGCATCAACATCAATTGATTCAGGACAATTGCCTGATCTTGTATCACATAATATTGACG
TCAACTCGCGTCAAATCATTAAAGAAGGATGGTTATTTAAACGTGGTGAACATATAAAAA
ATTGGAGATCGCGCTATTTTATTTTACGATCAGACGGCTCACTTGTAGGCTATAAGAATC
GACCAGACGCTCAAATTCCAACTGAGCCGTCCAATAATTTTACTGTTGCACGATGTCAAA
TCATGTCAGTTGATCGACCAAGACCTTATACATTTATAATCAGAGGCCTACAATGGACCA
CTGTCATCGAGCGAATGTTTTATGTCGAGACAGAGCATGAGAGAACCCAATGGGTTGAAG
CTATACGGAGTGTTGCAAATCGTCTGAGTGAAATTGATCAACAAAAACAGGCTCAAGCTA
ATGAAGACATTGAAATGGTACCGATTGCTGAAGATGCCTTACTTAATGAAAAATTCTCAC
TTCAAGGTACATCAACAGGAAAAGTTAGTGGAAGAAAAAAAGTGTCAATATAATTTCAGA
CATTGGAAAATTTTGAATTTTTAAAAGTATTGGGAAAAGGCACTTTTGGAAAAGTAATTT
TATGTCGTGAAAAAATCACAGCAAAATTATATGCTATTAAAATTCTTAAAAAAGAAGTTA
TTATTCAAAAAGATGAAGTAAAACACACAATGGCTGAAAATCGTGTACTTCAAAGAACAA
ATCATCCCTTTTTAATTTCGCTTAAATATTCATTTCAAACAAATGAACGTTTATGTTTTG
TCATGGAGGTAAGCCAAAAAAAAATCAACTTCTTTTTCTAACATAAAATAATTCAATTTC
TCTCCTTCCTTCTTTTAGTATGTCAACGGCGGTGAATTGTTCTTTCATTTAAGCCGTGAC
AGAATATTTTCAGAGGAACGTACTCGATTTTACGGAGCTGAAATAATATCTGCCCTCGGA
TATTTGCATTCGCACAACATTATTTATCGTGACTTAAAATTAGAAAATCTCTTACTTGAT
AAAGATGGTCATATAAAAATTGCAGATTTTGGTTTATGTAAGGAAGATATTACATATGGT
AGAACAACGAAAACTTTTTGTGGAACACCCGAATATTTAGCACCAGAAGTGCTTGAAGAC
AACGATTACGGACGTGCAGTCGATTGGTGGGGCACGGGTGTCGTCATGTACGAAATGATT
TGTGGTCGATTACCTTTTTACAATCGTGATCACGAAGTGCTTTTTACTTTGATCATGGTC
GAAGATGTGAAATTTCCACGTAACATTTCTAGTGAAGCGAGATCACTTTTAACTGGATTT
CTTGAAAAAAGTCCCCAAAAGCGCCTCGGTGGTGGACCAGATGATGTTCGAGAAATAATG
GTGCATCCTTTCTTTGCTAGCATCAATTGGTATGATTTAGTGAATAAGAAAATTATTCCA
CCGTTCAAGCCGCAAGTTACCTCAGATACTGATACACGCTATTTCGATTCTGAATTTACG
GGTGAGAGTGTCGAATTGACACCGCCTGATCCAGCTGTTCAATTACAATCAATTCAGGAA
GAACCTCATTTTTCACAATTCAGCTATCAAGATTTAAATTCGTACATGAGCAGTTCTACA
CTTGCATCATTACAATAGAAAAACTACAAGATATTGCACAGATATTTCTTATTGAAAAAA
TCTCCTAAAATTAACTTTTTCATAGAGATAAAAGTTTTTTGTACAACTGTGATAATTTTC
TAAAATGATTACCATTTCTTTTATTAAAATTAAGTAATATGAGGATAGAATGATGATGAT
GATAAAAAATTGGATATATTACAATTATCAAATTAAAAAAAACACATGAAAATATACTAA
TATTTCAAATGACGTTTTATAGGAATTTTCTACAGAGAAAGGAAAATTTTCCACGCCTAA
ATACAATGTTCGTGACTCTATGCTCTTCGTGAGAAAAAAATGATAAGAATATTAAACTGC
CACGAGACTTGAGAAACCACCAAATTGCCAATATCTTATACAATATAATACATAGGTAGT
AATATCGATTAATGAAGCTTGTTCTTTAAAAATGAGACTTCTGAAAATATATTATATAGA
TTGATATAGATGAAAGAAAATGAATCAAAAAAATTTTCGAGTATAGTGTGCACGAAAAAG
TGACTGGAAAAAATATCAATTCGGTGCTGATCAAAAAGCATTTAGTTTCATTAACATCTT
TCAATTATTTGATTACAACGTTTTCATCA
>g11019.t13 Gene=g11019 Length=179
MSLASTSIDSGQLPDLVSHNIDVNSRQIIKEGWLFKRGEHIKNWRSRYFILRSDGSLVGY
KNRPDAQIPTEPSNNFTVARCQIMSVDRPRPYTFIIRGLQWTTVIERMFYVETEHERTQW
VEAIRSVANRLSEIDQQKQAQANEDIEMVPIAEDALLNEKFSLQGTSTGKVSGRKKVSI
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g11019.t13 | CDD | cd01241 | PH_PKB | 26 | 131 | 0.000 |
| 6 | g11019.t13 | Gene3D | G3DSA:2.30.29.30 | - | 22 | 143 | 0.000 |
| 2 | g11019.t13 | PANTHER | PTHR24351:SF209 | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 29 | 177 | 0.000 |
| 3 | g11019.t13 | PANTHER | PTHR24351 | RIBOSOMAL PROTEIN S6 KINASE | 29 | 177 | 0.000 |
| 1 | g11019.t13 | Pfam | PF00169 | PH domain | 29 | 127 | 0.000 |
| 7 | g11019.t13 | ProSiteProfiles | PS50003 | PH domain profile. | 27 | 129 | 17.002 |
| 5 | g11019.t13 | SMART | SM00233 | PH_update | 28 | 131 | 0.000 |
| 4 | g11019.t13 | SUPERFAMILY | SSF50729 | PH domain-like | 24 | 135 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
