General information for g11019.t17
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative RAC serine/threonine-protein kinase.
Parent gene
- The parent gene g11019 is located on chr_1: 13430427..13431038 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11019 | g11019.t17 | isoform | g11019.t17 | 13427539 | 13429108 |
| chr_1 | g11019 | g11019.t17 | exon | g11019.t17.exon1 | 13427539 | 13427912 |
| chr_1 | g11019 | g11019.t17 | cds | g11019.t17.CDS1 | 13427539 | 13427912 |
| chr_1 | g11019 | g11019.t17 | exon | g11019.t17.exon2 | 13428410 | 13428570 |
| chr_1 | g11019 | g11019.t17 | cds | g11019.t17.CDS2 | 13428410 | 13428570 |
| chr_1 | g11019 | g11019.t17 | exon | g11019.t17.exon3 | 13428631 | 13428828 |
| chr_1 | g11019 | g11019.t17 | cds | g11019.t17.CDS3 | 13428631 | 13428647 |
| chr_1 | g11019 | g11019.t17 | exon | g11019.t17.exon4 | 13428892 | 13428942 |
| chr_1 | g11019 | g11019.t17 | exon | g11019.t17.exon5 | 13429013 | 13429108 |
| chr_1 | g11019 | g11019.t17 | TSS | g11019.t17 | NA | NA |
| chr_1 | g11019 | g11019.t17 | TTS | g11019.t17 | NA | NA |
Sequences
>g11019.t17 Gene=g11019 Length=880
ATGTCACTTGCATCAACATCAATTGATTCAGGACAATTGCCTGATCTTGTATCACATAAT
ATTGACGTCAACTCGCGTCAAATCATTAAAGAAGGATGGTTATTTAAACGTGGTGAACAT
ATAAAAAATTGGAGATCGCGCTATTTTATTTTACGATCAGACGGCTCACTTGTAGGCTAT
AAGAATCGACCAGACGCTCAAATTCCAACTGAGCCGTCCAATAATTTTACTGTTGCACGA
TGTCAAATCATGTCAGTTGATCGACCAAGACCTTATACATTTATAATCAGAGGCCTACAA
TGGACCACTGTCATCGAGCGAATGTTTTATGTCGAGACAGAGCATGAGAGAACCCAATGG
GTTGAAGCTATACGGAGTGTTGCAAATCGTCTGAGTGAAATTGATCAACAAAAACAGGCT
CAAGCTAATGAAGACATTGAAATGGTACCGATTGCTGAAGATGCCTTACTTAATGAAAAA
TTCTCACTTCAAGGTACATCAACAGGAAAAGTTAGTGGAAGAAAAAAAGTGGTACACATT
GGAAAATTTTGAATTTTTAAAAGTATTGGGAAAAGGCACTTTTGGAAAAGTAATTTTATG
TCGTGAAAAAATCACAGCAAAATTATATGCTATTAAAATTCTTAAAAAAGAAGTTATTAT
TCAAAAAGATGAAGTAAAACACACAATGGCTGAAAATCGTGTACTTCAAAGAACAAATCA
TCCCTTTTTAATTTCGCTTAAATATTCATTTCAAACAAATGAACGTTTATGTTTTGTCAT
GGAGTATGTCAACGGCGGTGAATTGTTCTTTCATTTAAGCCGTGACAGAATATTTTCAGA
GGAACGTACTCGATTTTACGGAGCTGAAATAATATCTGCC
>g11019.t17 Gene=g11019 Length=183
MSLASTSIDSGQLPDLVSHNIDVNSRQIIKEGWLFKRGEHIKNWRSRYFILRSDGSLVGY
KNRPDAQIPTEPSNNFTVARCQIMSVDRPRPYTFIIRGLQWTTVIERMFYVETEHERTQW
VEAIRSVANRLSEIDQQKQAQANEDIEMVPIAEDALLNEKFSLQGTSTGKVSGRKKVVHI
GKF
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g11019.t17 | CDD | cd01241 | PH_PKB | 26 | 131 | 0.000 |
| 6 | g11019.t17 | Gene3D | G3DSA:2.30.29.30 | - | 22 | 143 | 0.000 |
| 2 | g11019.t17 | PANTHER | PTHR24351:SF209 | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 29 | 177 | 0.000 |
| 3 | g11019.t17 | PANTHER | PTHR24351 | RIBOSOMAL PROTEIN S6 KINASE | 29 | 177 | 0.000 |
| 1 | g11019.t17 | Pfam | PF00169 | PH domain | 29 | 127 | 0.000 |
| 7 | g11019.t17 | ProSiteProfiles | PS50003 | PH domain profile. | 27 | 129 | 17.002 |
| 5 | g11019.t17 | SMART | SM00233 | PH_update | 28 | 131 | 0.000 |
| 4 | g11019.t17 | SUPERFAMILY | SSF50729 | PH domain-like | 24 | 135 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
