General information for g11019.t18
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as RAC serine/threonine-protein kinase.
Parent gene
- The parent gene g11019 is located on chr_1: 13430427..13431038 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11019 | g11019.t18 | isoform | g11019.t18 | 13428818 | 13430287 |
| chr_1 | g11019 | g11019.t18 | exon | g11019.t18.exon1 | 13428818 | 13428828 |
| chr_1 | g11019 | g11019.t18 | exon | g11019.t18.exon2 | 13428892 | 13428942 |
| chr_1 | g11019 | g11019.t18 | exon | g11019.t18.exon3 | 13429013 | 13429113 |
| chr_1 | g11019 | g11019.t18 | exon | g11019.t18.exon4 | 13429531 | 13429691 |
| chr_1 | g11019 | g11019.t18 | exon | g11019.t18.exon5 | 13429848 | 13430287 |
| chr_1 | g11019 | g11019.t18 | cds | g11019.t18.CDS1 | 13429918 | 13430286 |
| chr_1 | g11019 | g11019.t18 | TTS | g11019.t18 | 13430463 | 13430463 |
| chr_1 | g11019 | g11019.t18 | TSS | g11019.t18 | NA | NA |
Sequences
>g11019.t18 Gene=g11019 Length=764
CCTTTTTAATTTCGCTTAAATATTCATTTCAAACAAATGAACGTTTATGTTTTGTCATGG
AGTATGTCAACGGCGGTGAATTGTTCTTTCATTTAAGCCGTGACAGAATATTTTCAGAGG
AACGTACTCGATTTTACGGAGCTGAAATAATATCTGCCCTCGGATATTTGCATTCGCACA
ACATTATTTATCGTGACTTAAAATTAGAAAATCTCTTACTTGATAAAGATGGTCATATAA
AAATTGCAGATTTTGGTTTATGTAAGGAAGATATTACATATGGTAGAACAACGAAAACTT
TTTGTGGTGAGTTCAATATCACTGAGAAGTGCTTGAAGACAACGATTACGGACGTGCAGT
CGATTGGTGGGGCACGGGTGTCGTCATGTACGAAATGATTTGTGGTCGATTACCTTTTTA
CAATCGTGATCACGAAGTGCTTTTTACTTTGATCATGGTCGAAGATGTGAAATTTCCACG
TAACATTTCTAGTGAAGCGAGATCACTTTTAACTGGATTTCTTGAAAAAAGTCCCCAAAA
GCGCCTCGGTGGTGGACCAGATGATGTTCGAGAAATAATGGTGCATCCTTTCTTTGCTAG
CATCAATTGGTATGATTTAGTGAATAAGAAAATTATTCCACCGTTCAAGCCGCAAGTTAC
CTCAGATACTGATACACGCTATTTCGATTCTGAATTTACGGGTGAGAGTGTCGAATTGAC
ACCGCCTGATCCAGCTGTTCAATTACAATCAATTCAGGAAGAAC
>g11019.t18 Gene=g11019 Length=123
MICGRLPFYNRDHEVLFTLIMVEDVKFPRNISSEARSLLTGFLEKSPQKRLGGGPDDVRE
IMVHPFFASINWYDLVNKKIIPPFKPQVTSDTDTRYFDSEFTGESVELTPPDPAVQLQSI
QEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g11019.t18 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 86 | 3.3E-34 |
| 7 | g11019.t18 | Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 87 | 114 | 3.3E-34 |
| 6 | g11019.t18 | MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 123 | - |
| 2 | g11019.t18 | PANTHER | PTHR24351:SF209 | NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE | 1 | 117 | 6.2E-60 |
| 3 | g11019.t18 | PANTHER | PTHR24351 | RIBOSOMAL PROTEIN S6 KINASE | 1 | 117 | 6.2E-60 |
| 1 | g11019.t18 | Pfam | PF00433 | Protein kinase C terminal domain | 88 | 113 | 4.2E-8 |
| 9 | g11019.t18 | ProSiteProfiles | PS51285 | AGC-kinase C-terminal domain profile. | 68 | 123 | 14.221 |
| 5 | g11019.t18 | SMART | SM00133 | pkinase_C_6 | 68 | 121 | 9.3E-13 |
| 4 | g11019.t18 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 1 | 117 | 1.48E-18 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004674 | protein serine/threonine kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
