Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Probable cytochrome P450 313a1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11037 g11037.t2 isoform g11037.t2 13615960 13621119
chr_1 g11037 g11037.t2 exon g11037.t2.exon1 13615960 13615967
chr_1 g11037 g11037.t2 exon g11037.t2.exon2 13619791 13620802
chr_1 g11037 g11037.t2 cds g11037.t2.CDS1 13619881 13620802
chr_1 g11037 g11037.t2 exon g11037.t2.exon3 13620861 13621119
chr_1 g11037 g11037.t2 cds g11037.t2.CDS2 13620861 13620937
chr_1 g11037 g11037.t2 TSS g11037.t2 NA NA
chr_1 g11037 g11037.t2 TTS g11037.t2 NA NA

Sequences

>g11037.t2 Gene=g11037 Length=1279
GTGAAACTTGGGTTGATCATAGAAAATTCCTTGAAGATTCATTCAGATTGGATGTCATAA
AAAGTTTCATCTCTATATTTGTTGACAGTTCGAATCAGCTTGTAGCATCATTAAGTCAAA
CTAAAGAGCAGGATGAAACCAAAATTGATATTTTCAAATTAGTTTCAAGGTCCTCACTAA
CTATGGTTCTTGCTACCTCATTTGGCATCAACGCATCAGAAGTTCATTTTGATGATGAAA
TTTTGAAGGCTGTTGAAGAGCTTATAAAAATAATTTCGCTTAGATGTCATGAGCCGGTTT
TATACTTTGAGCCAATATATCGCATGACACGAAATTACTACAGAGAGAAAAAATACCGCA
AACGTACTACATACTATCTCGACCAAGTGCTCAAAGAACGTCGCGAGTTAATTTCACCAA
ATAATAATCTTACAACTGCTTCATCAGTCGCTACAATGAGAACAGATATCACAAAAGATG
AAGAGATGGGAATAACAGTGCAAGAAATACCAAATATATCGCTCAACAGTCACAGCTTTA
TTGACCACATGGTGATGCAGAGCGGAGCATTTAATGATGAAGAAATTCACGATCACATCT
ACACTTTCGTTGCTGCCGGTTATGAAACTGTTGCATTGCAGACATTTTTCACACTGTTGC
TGCTTGCTATACACACTGACATGCAAGAGCGAGTTCACTGTGAAGTAGTTAATGTTGGTG
ACATTAATTGTGAGTCACTCGACAAGCTCAATTACCTTGACCGAGTCATTAAAGAGTCTA
TGCGACTACTACCGAGTGTGCCAATTGTGGGGCGTGAAACTCGCGAGGAAGTCGTGATTG
GTGATAAGAAAATTCCAAAAGGCATCACTTTGCTTATTCATTTATTTAATTTGCATCGAA
GGAAGGATATATGGGGCGATGATGCACATGAGTTTAATCCAGATAGATTTCTACCTGAAA
ATGTTGCTCAAAGACATTCACACAGCTTCTTGCCTTTTTCTGAAGGTTTAAGGGATTGTA
TTGGGAAAGTTTATGCTATGTATGCAATTAAAACTATGCTAGTGACAATTTTGAGAAAAT
TTAAAGTCTCAACAGATTTAAAATTTGGAGAACTTAGTTATAAGGCTGATATTACACTAA
AAATATGTCAGAATACAAAGATAAAAATTGAAAAAAGATAAAATGTGATTGGTTCTAAAA
ATTATTATTAAAAATATTATTTAACAAAATAAATTTTGCCAGTGTTTTGAAAAAAAAAAT
GGTTTTAAATAAAAGAAAA

>g11037.t2 Gene=g11037 Length=332
MVLATSFGINASEVHFDDEILKAVEELIKIISLRCHEPVLYFEPIYRMTRNYYREKKYRK
RTTYYLDQVLKERRELISPNNNLTTASSVATMRTDITKDEEMGITVQEIPNISLNSHSFI
DHMVMQSGAFNDEEIHDHIYTFVAAGYETVALQTFFTLLLLAIHTDMQERVHCEVVNVGD
INCESLDKLNYLDRVIKESMRLLPSVPIVGRETREEVVIGDKKIPKGITLLIHLFNLHRR
KDIWGDDAHEFNPDRFLPENVAQRHSHSFLPFSEGLRDCIGKVYAMYAIKTMLVTILRKF
KVSTDLKFGELSYKADITLKICQNTKIKIEKR

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g11037.t2 Gene3D G3DSA:1.10.630.10 Cytochrome p450 1 332 3.4E-65
2 g11037.t2 PANTHER PTHR24291:SF140 CYTOCHROME P450 4C3-RELATED 5 332 7.2E-64
3 g11037.t2 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 5 332 7.2E-64
6 g11037.t2 PRINTS PR00385 P450 superfamily signature 145 162 3.6E-8
10 g11037.t2 PRINTS PR00465 E-class P450 group IV signature 189 205 9.2E-12
7 g11037.t2 PRINTS PR00385 P450 superfamily signature 194 205 3.6E-8
11 g11037.t2 PRINTS PR00465 E-class P450 group IV signature 239 257 9.2E-12
8 g11037.t2 PRINTS PR00465 E-class P450 group IV signature 263 279 9.2E-12
4 g11037.t2 PRINTS PR00385 P450 superfamily signature 270 279 3.6E-8
5 g11037.t2 PRINTS PR00385 P450 superfamily signature 279 290 3.6E-8
9 g11037.t2 PRINTS PR00465 E-class P450 group IV signature 279 297 9.2E-12
1 g11037.t2 Pfam PF00067 Cytochrome P450 6 304 3.1E-57
13 g11037.t2 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 272 281 -
12 g11037.t2 SUPERFAMILY SSF48264 Cytochrome P450 5 332 9.56E-67

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0004497 monooxygenase activity MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed