Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Probable cytochrome P450 313a1.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11039 g11039.t2 TTS g11039.t2 13632039 13632039
chr_1 g11039 g11039.t2 isoform g11039.t2 13632355 13635530
chr_1 g11039 g11039.t2 exon g11039.t2.exon1 13632355 13632515
chr_1 g11039 g11039.t2 cds g11039.t2.CDS1 13632355 13632515
chr_1 g11039 g11039.t2 exon g11039.t2.exon2 13632582 13632764
chr_1 g11039 g11039.t2 cds g11039.t2.CDS2 13632582 13632764
chr_1 g11039 g11039.t2 exon g11039.t2.exon3 13632836 13632874
chr_1 g11039 g11039.t2 cds g11039.t2.CDS3 13632836 13632874
chr_1 g11039 g11039.t2 exon g11039.t2.exon4 13632927 13633091
chr_1 g11039 g11039.t2 cds g11039.t2.CDS4 13632927 13633091
chr_1 g11039 g11039.t2 exon g11039.t2.exon5 13633238 13633586
chr_1 g11039 g11039.t2 cds g11039.t2.CDS5 13633238 13633586
chr_1 g11039 g11039.t2 exon g11039.t2.exon6 13633665 13633791
chr_1 g11039 g11039.t2 cds g11039.t2.CDS6 13633665 13633791
chr_1 g11039 g11039.t2 exon g11039.t2.exon7 13634550 13634616
chr_1 g11039 g11039.t2 cds g11039.t2.CDS7 13634550 13634616
chr_1 g11039 g11039.t2 exon g11039.t2.exon8 13634837 13635530
chr_1 g11039 g11039.t2 cds g11039.t2.CDS8 13634837 13634879
chr_1 g11039 g11039.t2 TSS g11039.t2 13635687 13635687

Sequences

>g11039.t2 Gene=g11039 Length=1785
TGGCATTTTGAGCATAAAAAGTTTTATAAATTTGCTGATAAAATTCCAAGTGCTAAAAAT
TATGGAATTTTGGGACATGGTCCACATTTCTTGGGTAAAAATGATGAGGGTCGTTTTAAA
TTGCTACATGAACTGTGTTTAAAATTTGATCATTTGATAAAACTATGGCTCGGGCCAGCA
ATTTTATGGGTGCTTGTGAATGATCCAAAGACTATTCAAAAAGTGCTACTGTCACCTGTG
TGTCTTGAAAAGCCTTTTTTCTATAAATTTCTTCGTTTAGATTCTGGATTAATTTCTGCT
AGATGTGAGAAAAATAATAATATTATATTTTTGAAAAAGTGATAAAAGTATTTTTAACGA
ATTTTTTTAAAAACAAAAAATTTTTTAAAAAAATTTAAAATTTGAAATTTTTTTGAAAAT
TTGAAAAACTTTTGAATAAATTTGTGAAATTTTCAAAATGGTTAAAAAAGTGTAAATGAA
TTTTATAAATTTTTGTCTAAAACAGATGATGTCTGGAAAATTCATCGAAAATCACTCAAT
TATTCTTTCAACCTCAAAATTCTTCAAACCTTTATTCCAATTTTTATCGAAAATTCACAA
AAACTTGTCAACGATTTGGCTGTGAATATTGGAAAACGCAAGGAATTTGATATGCTAGCA
TACACATCAAAATCTGCTCTCAATATGATCTGCGGAACTTCATTTGGATTGGATATAAAA
AATATTGCACTTAGTGATGATGTTTTTCATGCTCTTGAAAAATTAAATCGAGCCATCTCA
GCCCGAAGTCAATCATTCTTTCTTTATTCGGAGCCAATTTATCGCATGTCACGATATTAT
CGCGATGAAATGGAATCGCGGTCAGTTTGCTATTCATCAGCTGATATGATTATAAAAGTA
AAAAGAAAAGCGCTAGAGGATGAAGAAAGTGTTAACAATAATCAGATTGATCGAGAAAAT
TATGAAGATGAATTATATCGTGAAACAATTGAAAGATTTCCAGAATTAAGAGCACTTAAA
AAAGAAGACATAATTAATCAAATCAAAGCAACATTCAATAAAAATAAGAAAAAGTCAACA
ATCACAGAAGAGGATGAAAATATGCCAACAAGAAAAATTTTTATTGATCACGTAATATGT
AATGACACAAAGTTCAACGATTCCGAAGTGCGTGATCATGTTTACACGGTTGTTGCTGCT
GGCAGTGAAACAACAGCTCTTCAAACTGCACACACGATTATGTTACTTGCAACTCATCAA
GAAATTCAGAATCGTGTTGCTGCTGAAATCAAAGAAGTTTTCTATTCAGATGACATTGAA
ATCAGTTACGACAACATTGTAAAGCTTGAATATCTTGAAAGAGTCATAAAAGAGTCGCTT
CGTTTATGTCCAGTTGTGCCAGTAATTGGAAGAGAAACACAAGCGCCAATAAAGCTAGAC
GATGACATAGAAATACCAGCAGGAATAACATTGTTAATAAATTTCTACACACTTCATCGA
AGACCAGACATTTGGGGTGATGATGCTGAAGAATTTAATCCTGATCATTTCTTGCCTGAA
TTTGTTGAAAAACGACATCCTTATAGTTTTCTGCCTTTCAGTGGTGGACAAAGAAATTGT
ATTGGCTACCGTTATGCAATGATAGCACTAAAAATTATTCTCGTTCATCTATTACGACGC
TACAAATTCAACACATCAATGACATACAAAGATCTTCGATTCCGAACCGATATCAACCTC
AAATTGTGCACAAAACATTTAGTCAGTATCGAATTAAGAGATTAG

>g11039.t2 Gene=g11039 Length=377
MLAYTSKSALNMICGTSFGLDIKNIALSDDVFHALEKLNRAISARSQSFFLYSEPIYRMS
RYYRDEMESRSVCYSSADMIIKVKRKALEDEESVNNNQIDRENYEDELYRETIERFPELR
ALKKEDIINQIKATFNKNKKKSTITEEDENMPTRKIFIDHVICNDTKFNDSEVRDHVYTV
VAAGSETTALQTAHTIMLLATHQEIQNRVAAEIKEVFYSDDIEISYDNIVKLEYLERVIK
ESLRLCPVVPVIGRETQAPIKLDDDIEIPAGITLLINFYTLHRRPDIWGDDAEEFNPDHF
LPEFVEKRHPYSFLPFSGGQRNCIGYRYAMIALKIILVHLLRRYKFNTSMTYKDLRFRTD
INLKLCTKHLVSIELRD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g11039.t2 Gene3D G3DSA:1.10.630.10 Cytochrome p450 97 374 9.9E-72
2 g11039.t2 PANTHER PTHR24291:SF105 CYTOCHROME P450 4P1-RELATED 125 369 8.1E-65
3 g11039.t2 PANTHER PTHR24291 CYTOCHROME P450 FAMILY 4 125 369 8.1E-65
6 g11039.t2 PRINTS PR00463 E-class P450 group I signature 172 189 7.9E-16
11 g11039.t2 PRINTS PR00385 P450 superfamily signature 183 200 7.3E-10
9 g11039.t2 PRINTS PR00463 E-class P450 group I signature 192 218 7.9E-16
5 g11039.t2 PRINTS PR00463 E-class P450 group I signature 236 254 7.9E-16
10 g11039.t2 PRINTS PR00385 P450 superfamily signature 237 248 7.3E-10
7 g11039.t2 PRINTS PR00463 E-class P450 group I signature 278 302 7.9E-16
4 g11039.t2 PRINTS PR00463 E-class P450 group I signature 313 323 7.9E-16
12 g11039.t2 PRINTS PR00385 P450 superfamily signature 314 323 7.3E-10
8 g11039.t2 PRINTS PR00463 E-class P450 group I signature 323 346 7.9E-16
13 g11039.t2 PRINTS PR00385 P450 superfamily signature 323 334 7.3E-10
1 g11039.t2 Pfam PF00067 Cytochrome P450 4 350 8.0E-62
18 g11039.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 1 323 -
19 g11039.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 324 341 -
17 g11039.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 342 377 -
15 g11039.t2 ProSitePatterns PS00086 Cytochrome P450 cysteine heme-iron ligand signature. 316 325 -
14 g11039.t2 SUPERFAMILY SSF48264 Cytochrome P450 3 376 1.27E-68

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0020037 heme binding MF
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen MF
GO:0005506 iron ion binding MF
GO:0055114 NA NA

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed