General information for g11039.t3
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Probable cytochrome P450 313a1.
Parent gene
- The parent gene g11039 is located on chr_1: 13633583..13640216 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11039 | g11039.t3 | TTS | g11039.t3 | 13632039 | 13632039 |
| chr_1 | g11039 | g11039.t3 | isoform | g11039.t3 | 13632585 | 13635530 |
| chr_1 | g11039 | g11039.t3 | exon | g11039.t3.exon1 | 13632585 | 13632764 |
| chr_1 | g11039 | g11039.t3 | cds | g11039.t3.CDS1 | 13632586 | 13632764 |
| chr_1 | g11039 | g11039.t3 | exon | g11039.t3.exon2 | 13632836 | 13632874 |
| chr_1 | g11039 | g11039.t3 | cds | g11039.t3.CDS2 | 13632836 | 13632874 |
| chr_1 | g11039 | g11039.t3 | exon | g11039.t3.exon3 | 13632927 | 13633091 |
| chr_1 | g11039 | g11039.t3 | cds | g11039.t3.CDS3 | 13632927 | 13633091 |
| chr_1 | g11039 | g11039.t3 | exon | g11039.t3.exon4 | 13633238 | 13633586 |
| chr_1 | g11039 | g11039.t3 | cds | g11039.t3.CDS4 | 13633238 | 13633586 |
| chr_1 | g11039 | g11039.t3 | exon | g11039.t3.exon5 | 13633665 | 13633791 |
| chr_1 | g11039 | g11039.t3 | cds | g11039.t3.CDS5 | 13633665 | 13633791 |
| chr_1 | g11039 | g11039.t3 | exon | g11039.t3.exon6 | 13634550 | 13634616 |
| chr_1 | g11039 | g11039.t3 | cds | g11039.t3.CDS6 | 13634550 | 13634616 |
| chr_1 | g11039 | g11039.t3 | exon | g11039.t3.exon7 | 13634837 | 13635025 |
| chr_1 | g11039 | g11039.t3 | cds | g11039.t3.CDS7 | 13634837 | 13634879 |
| chr_1 | g11039 | g11039.t3 | exon | g11039.t3.exon8 | 13635227 | 13635530 |
| chr_1 | g11039 | g11039.t3 | TSS | g11039.t3 | 13635687 | 13635687 |
Sequences
>g11039.t3 Gene=g11039 Length=1420
TGGCATTTTGAGCATAAAAAGTTTTATAAATTTGCTGATAAAATTCCAAGTGCTAAAAAT
TATGGAATTTTGGGACATGGTCCACATTTCTTGGGTAAAAATGATGAGGGTCGTTTTAAA
TTGCTACATGAACTGTGTTTAAAATTTGATCATTTGATAAAACTATGGCTCGGGCCAGCA
ATTTTATGGGTGCTTGTGAATGATCCAAAGACTATTCAAAAAGTGCTACTGTCACCTGTG
TGTCTTGAAAAGCCTTTTTTCTATAAATTTCTTCGTTTAGATTCTGGATTAATTTCTGCT
AGATATGATGTCTGGAAAATTCATCGAAAATCACTCAATTATTCTTTCAACCTCAAAATT
CTTCAAACCTTTATTCCAATTTTTATCGAAAATTCACAAAAACTTGTCAACGATTTGGCT
GTGAATATTGGAAAACGCAAGGAATTTGATATGCTAGCATACACATCAAAATCTGCTCTC
AATATGATCTGCGGAACTTCATTTGGATTGGATATAAAAAATATTGCACTTAGTGATGAT
GTTTTTCATGCTCTTGAAAAATTAAATCGAGCCATCTCAGCCCGAAGTCAATCATTCTTT
CTTTATTCGGAGCCAATTTATCGCATGTCACGATATTATCGCGATGAAATGGAATCGCGG
TCAGTTTGCTATTCATCAGCTGATATGATTATAAAAGTAAAAAGAAAAGCGCTAGAGGAT
GAAGAAAGTGTTAACAATAATCAGATTGATCGAGAAAATTATGAAGATGAATTATATCGT
GAAACAATTGAAAGATTTCCAGAATTAAGAGCACTTAAAAAAGAAGACATAATTAATCAA
ATCAAAGCAACATTCAATAAAAATAAGAAAAAGTCAACAATCACAGAAGAGGATGAAAAT
ATGCCAACAAGAAAAATTTTTATTGATCACGTAATATGTAATGACACAAAGTTCAACGAT
TCCGAAGTGCGTGATCATGTTTACACGGTTGTTGCTGCTGGCAGTGAAACAACAGCTCTT
CAAACTGCACACACGATTATGTTACTTGCAACTCATCAAGAAATTCAGAATCGTGTTGCT
GCTGAAATCAAAGAAGTTTTCTATTCAGATGACATTGAAATCAGTTACGACAACATTGTA
AAGCTTGAATATCTTGAAAGAGTCATAAAAGAGTCGCTTCGTTTATGTCCAGTTGTGCCA
GTAATTGGAAGAGAAACACAAGCGCCAATAAAGCTAGACGATGACATAGAAATACCAGCA
GGAATAACATTGTTAATAAATTTCTACACACTTCATCGAAGACCAGACATTTGGGGTGAT
GATGCTGAAGAATTTAATCCTGATCATTTCTTGCCTGAATTTGTTGAAAAACGACATCCT
TATAGTTTTCTGCCTTTCAGTGGTGGACAAAGAAATTGTA
>g11039.t3 Gene=g11039 Length=323
MLAYTSKSALNMICGTSFGLDIKNIALSDDVFHALEKLNRAISARSQSFFLYSEPIYRMS
RYYRDEMESRSVCYSSADMIIKVKRKALEDEESVNNNQIDRENYEDELYRETIERFPELR
ALKKEDIINQIKATFNKNKKKSTITEEDENMPTRKIFIDHVICNDTKFNDSEVRDHVYTV
VAAGSETTALQTAHTIMLLATHQEIQNRVAAEIKEVFYSDDIEISYDNIVKLEYLERVIK
ESLRLCPVVPVIGRETQAPIKLDDDIEIPAGITLLINFYTLHRRPDIWGDDAEEFNPDHF
LPEFVEKRHPYSFLPFSGGQRNC
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 13 | g11039.t3 | Gene3D | G3DSA:1.10.630.10 | Cytochrome p450 | 95 | 323 | 0e+00 |
| 2 | g11039.t3 | PANTHER | PTHR24291:SF140 | CYTOCHROME P450 4C3-RELATED | 4 | 323 | 0e+00 |
| 3 | g11039.t3 | PANTHER | PTHR24291 | CYTOCHROME P450 FAMILY 4 | 4 | 323 | 0e+00 |
| 6 | g11039.t3 | PRINTS | PR00463 | E-class P450 group I signature | 172 | 189 | 0e+00 |
| 10 | g11039.t3 | PRINTS | PR00385 | P450 superfamily signature | 183 | 200 | 2e-07 |
| 8 | g11039.t3 | PRINTS | PR00463 | E-class P450 group I signature | 192 | 218 | 0e+00 |
| 5 | g11039.t3 | PRINTS | PR00463 | E-class P450 group I signature | 236 | 254 | 0e+00 |
| 9 | g11039.t3 | PRINTS | PR00385 | P450 superfamily signature | 237 | 248 | 2e-07 |
| 7 | g11039.t3 | PRINTS | PR00463 | E-class P450 group I signature | 278 | 302 | 0e+00 |
| 4 | g11039.t3 | PRINTS | PR00463 | E-class P450 group I signature | 313 | 323 | 0e+00 |
| 11 | g11039.t3 | PRINTS | PR00385 | P450 superfamily signature | 314 | 323 | 2e-07 |
| 1 | g11039.t3 | Pfam | PF00067 | Cytochrome P450 | 127 | 323 | 0e+00 |
| 12 | g11039.t3 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 3 | 323 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed