General information for g11039.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11039 is located on chr_1: 13633583..13640216 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11039 | g11039.t4 | isoform | g11039.t4 | 13633238 | 13635530 |
| chr_1 | g11039 | g11039.t4 | exon | g11039.t4.exon1 | 13633238 | 13633586 |
| chr_1 | g11039 | g11039.t4 | cds | g11039.t4.CDS1 | 13633239 | 13633586 |
| chr_1 | g11039 | g11039.t4 | exon | g11039.t4.exon2 | 13633665 | 13633791 |
| chr_1 | g11039 | g11039.t4 | cds | g11039.t4.CDS2 | 13633665 | 13633791 |
| chr_1 | g11039 | g11039.t4 | exon | g11039.t4.exon3 | 13634550 | 13634616 |
| chr_1 | g11039 | g11039.t4 | cds | g11039.t4.CDS3 | 13634550 | 13634616 |
| chr_1 | g11039 | g11039.t4 | exon | g11039.t4.exon4 | 13634837 | 13635025 |
| chr_1 | g11039 | g11039.t4 | cds | g11039.t4.CDS4 | 13634837 | 13634879 |
| chr_1 | g11039 | g11039.t4 | exon | g11039.t4.exon5 | 13635227 | 13635530 |
| chr_1 | g11039 | g11039.t4 | TSS | g11039.t4 | 13635687 | 13635687 |
| chr_1 | g11039 | g11039.t4 | TTS | g11039.t4 | NA | NA |
Sequences
>g11039.t4 Gene=g11039 Length=1036
TGGCATTTTGAGCATAAAAAGTTTTATAAATTTGCTGATAAAATTCCAAGTGCTAAAAAT
TATGGAATTTTGGGACATGGTCCACATTTCTTGGGTAAAAATGATGAGGGTCGTTTTAAA
TTGCTACATGAACTGTGTTTAAAATTTGATCATTTGATAAAACTATGGCTCGGGCCAGCA
ATTTTATGGGTGCTTGTGAATGATCCAAAGACTATTCAAAAAGTGCTACTGTCACCTGTG
TGTCTTGAAAAGCCTTTTTTCTATAAATTTCTTCGTTTAGATTCTGGATTAATTTCTGCT
AGATATGATGTCTGGAAAATTCATCGAAAATCACTCAATTATTCTTTCAACCTCAAAATT
CTTCAAACCTTTATTCCAATTTTTATCGAAAATTCACAAAAACTTGTCAACGATTTGGCT
GTGAATATTGGAAAACGCAAGGAATTTGATATGCTAGCATACACATCAAAATCTGCTCTC
AATATGATCTGCGGAACTTCATTTGGATTGGATATAAAAAATATTGCACTTAGTGATGAT
GTTTTTCATGCTCTTGAAAAATTAAATCGAGCCATCTCAGCCCGAAGTCAATCATTCTTT
CTTTATTCGGAGCCAATTTATCGCATGTCACGATATTATCGCGATGAAATGGAATCGCGG
TCAGTTTGCTATTCATCAGCTGATATGATTATAAAAGTAAAAAGAAAAGCGCTAGAGGAT
GAAGAAAGTGTTAACAATAATCAGATTGATCGAGAAAATTATGAAGATGAATTATATCGT
GAAACAATTGAAAGATTTCCAGAATTAAGAGCACTTAAAAAAGAAGACATAATTAATCAA
ATCAAAGCAACATTCAATAAAAATAAGAAAAAGTCAACAATCACAGAAGAGGATGAAAAT
ATGCCAACAAGAAAAATTTTTATTGATCACGTAATATGTAATGACACAAAGTTCAACGAT
TCCGAAGTGCGTGATCATGTTTACACGGTTGTTGCTGCTGGCAGTGAAACAACAGCTCTT
CAAACTGCACACACGA
>g11039.t4 Gene=g11039 Length=195
MLAYTSKSALNMICGTSFGLDIKNIALSDDVFHALEKLNRAISARSQSFFLYSEPIYRMS
RYYRDEMESRSVCYSSADMIIKVKRKALEDEESVNNNQIDRENYEDELYRETIERFPELR
ALKKEDIINQIKATFNKNKKKSTITEEDENMPTRKIFIDHVICNDTKFNDSEVRDHVYTV
VAAGSETTALQTAHT
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value |
|---|---|---|---|---|---|---|
| g11039.t4 | SUPERFAMILY | SSF48264 | Cytochrome P450 | 3 | 192 | 3e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0020037 | heme binding | MF |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | MF |
| GO:0005506 | iron ion binding | MF |
| GO:0055114 | NA | NA |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed