General information for g11056.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Origin recognition complex subunit 1.
Parent gene
- The parent gene g11056 is located on chr_1: 13722844..13724671 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11056 | g11056.t1 | TTS | g11056.t1 | 13722758 | 13722758 |
| chr_1 | g11056 | g11056.t1 | isoform | g11056.t1 | 13722844 | 13724671 |
| chr_1 | g11056 | g11056.t1 | exon | g11056.t1.exon1 | 13722844 | 13723835 |
| chr_1 | g11056 | g11056.t1 | cds | g11056.t1.CDS1 | 13722844 | 13723835 |
| chr_1 | g11056 | g11056.t1 | exon | g11056.t1.exon2 | 13723903 | 13724671 |
| chr_1 | g11056 | g11056.t1 | cds | g11056.t1.CDS2 | 13723903 | 13724671 |
| chr_1 | g11056 | g11056.t1 | TSS | g11056.t1 | 13724729 | 13724729 |
Sequences
>g11056.t1 Gene=g11056 Length=1761
ATGACAAGTAAATCGAATAAAGATAATTTACCACGTGCTGGTTCAAGTGAGAGATTAGGT
CTTATTTTTAAACAAATTTCGAACGAACACCTTGATCCAAAAAGTCCTAGAAAATGGTCA
GTAGAATTAAAGAAAATTTATGAAGATCCAATACTTTCATCTATAGAAAATCAAGCGAAT
CTTAGCACACCAAAACGAAGAAGAGGTTTGATAAGCAAGAGTAATGAGACCACTCCAATT
AAAAGCTATGAAGCAACAACTCCAAAAAGCACAAGAAGATCTCGAGTTCTCAATAAAATT
GAAGAAGAAGAAAATCATGAAGAAAAAATTGTCAATGCTTCACCACCTAAAAGAACAAGA
CGAAACTCGGCATTAGTTGCTATTACAAAGATTAATGATAATGTAAATGAAATGTCCACA
GACGATCCATGTACACCGACAATTAAAGAAATTCCAGCAAGACGAAAGAGTATTTTGAAG
ACACCTACTGCATCAAAATCAAACACACCAAGACGAAGCATTCAATTTTCAGCTAAAATT
GAAGAGTATGAATTTGTTAAAAAGAGCGCTAAAAAGAGAGTAATTGATGAAGATGGCGAT
ATTGATATGAGTGGACTTGCAGTTGCTCGCAAACGCTTACATGTATCAGCTGTTCCTAAA
AGTTTACCATGTCGTGAGAAAGAATATATGGAAATTTATTCATTTCTTGAAAGCAACCTG
AATGATCAAATTGGTGGCTGCATTTACATATCAGGAGTTCCTGGCACTGGTAAGACCGCA
ACAACAACTGCTGTGATTCGTGCTCTAAAGGCGGAAGCAGAGAAAGGGGAAATTCCGGAT
TTTGAATTTGTTGAAATCAATGGAATGAGAATAACAGAACCAAGAAAAGCATATGTCGAG
ATTTACCGTCAATTGTCGGGAAAAACTGTGACAGCAGAACAAGCATATAATCTATTAGAT
AAACGTTTTACAACAACATCTAAGTCATCGAGACGTATAAGTACAATTCTGTTGGTTGAT
GAATTAGATATTCTATGTAATAAGCGTCAAGATGTTGTATACAATCTTCTCAATTGGCCA
AATGTCAATTCAGCACGCTTAATTGTTGTGACAATTGCCAATACAATGGATTTACCTGAG
AGAATATTGATGGGAAAAGTTACTTCACGTTTGGGATTAACTCGTTTAACTTTTCAACCA
TATTCACATAAACAGCTGCAAGAAATTGTCATTTCTCGCCTCAGTGGTCTTGATTCATTC
AATAATGATGCAATTCAATTAGTTGCAAGAAAAGTTGCTGCACTCTCTGGTGATGCTAGA
CGTGCTCTTGATATTTGTCGTCGCTCATCTGAGATTGCTGAGGTAGAAGCAAAAAATAAT
GGGAATAAAGCTTTTGTTGCAATGACACACGTTCAACAGGCACTCAATGAGATGATTTCA
TGTACCAAAGTAAAAGCAGTTAAAGCGTGCTCAAAAATGGAAAAATATTTTTTACAAGCC
GTATGTATGGAAGTCGAACGAACTGGCTTAGAAGAAGTGACTTTTTATGGAGTATATAAG
CAAATGAAAACAGTTACAACTCTCAATGGATTACCGCTCCCAACAACAGCAACTGCACTA
GCTATTTCTATGCGATTGGGTGCATCTCGTCTTATAATCTCAGAACACACACGTAAAGAT
ATTTATCAGAAAATTCTACTTAATATAAATGTCGACGATTTCTATTATGCAACACAAGTA
AGACTAAATGATGAGGAATAG
>g11056.t1 Gene=g11056 Length=586
MTSKSNKDNLPRAGSSERLGLIFKQISNEHLDPKSPRKWSVELKKIYEDPILSSIENQAN
LSTPKRRRGLISKSNETTPIKSYEATTPKSTRRSRVLNKIEEEENHEEKIVNASPPKRTR
RNSALVAITKINDNVNEMSTDDPCTPTIKEIPARRKSILKTPTASKSNTPRRSIQFSAKI
EEYEFVKKSAKKRVIDEDGDIDMSGLAVARKRLHVSAVPKSLPCREKEYMEIYSFLESNL
NDQIGGCIYISGVPGTGKTATTTAVIRALKAEAEKGEIPDFEFVEINGMRITEPRKAYVE
IYRQLSGKTVTAEQAYNLLDKRFTTTSKSSRRISTILLVDELDILCNKRQDVVYNLLNWP
NVNSARLIVVTIANTMDLPERILMGKVTSRLGLTRLTFQPYSHKQLQEIVISRLSGLDSF
NNDAIQLVARKVAALSGDARRALDICRRSSEIAEVEAKNNGNKAFVAMTHVQQALNEMIS
CTKVKAVKACSKMEKYFLQAVCMEVERTGLEEVTFYGVYKQMKTVTTLNGLPLPTTATAL
AISMRLGASRLIISEHTRKDIYQKILLNINVDDFYYATQVRLNDEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 9 | g11056.t1 | Gene3D | G3DSA:3.40.50.300 | - | 204 | 400 | 2.0E-66 |
| 10 | g11056.t1 | Gene3D | G3DSA:1.10.8.1280 | - | 402 | 501 | 9.1E-8 |
| 7 | g11056.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 93 | - |
| 8 | g11056.t1 | MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 95 | - |
| 3 | g11056.t1 | PANTHER | PTHR10763:SF23 | ORIGIN RECOGNITION COMPLEX SUBUNIT 1 | 73 | 579 | 1.8E-161 |
| 4 | g11056.t1 | PANTHER | PTHR10763 | CELL DIVISION CONTROL PROTEIN 6-RELATED | 73 | 579 | 1.8E-161 |
| 1 | g11056.t1 | Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 248 | 392 | 6.4E-16 |
| 2 | g11056.t1 | Pfam | PF17872 | AAA lid domain | 420 | 455 | 2.4E-10 |
| 6 | g11056.t1 | SMART | SM00382 | AAA_5 | 244 | 397 | 3.7E-6 |
| 5 | g11056.t1 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 210 | 470 | 3.3E-34 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
- This transcript has been annotated with K02603 (origin recognition complex subunit 1)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
