General information for g11056.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Origin recognition complex subunit 1.
Parent gene
- The parent gene g11056 is located on chr_1: 13722844..13724671 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11056 | g11056.t2 | TTS | g11056.t2 | 13722758 | 13722758 |
| chr_1 | g11056 | g11056.t2 | isoform | g11056.t2 | 13722844 | 13723835 |
| chr_1 | g11056 | g11056.t2 | exon | g11056.t2.exon1 | 13722844 | 13723835 |
| chr_1 | g11056 | g11056.t2 | cds | g11056.t2.CDS1 | 13722844 | 13723740 |
| chr_1 | g11056 | g11056.t2 | TSS | g11056.t2 | 13724729 | 13724729 |
Sequences
>g11056.t2 Gene=g11056 Length=992
GTAAGACCGCAACAACAACTGCTGTGATTCGTGCTCTAAAGGCGGAAGCAGAGAAAGGGG
AAATTCCGGATTTTGAATTTGTTGAAATCAATGGAATGAGAATAACAGAACCAAGAAAAG
CATATGTCGAGATTTACCGTCAATTGTCGGGAAAAACTGTGACAGCAGAACAAGCATATA
ATCTATTAGATAAACGTTTTACAACAACATCTAAGTCATCGAGACGTATAAGTACAATTC
TGTTGGTTGATGAATTAGATATTCTATGTAATAAGCGTCAAGATGTTGTATACAATCTTC
TCAATTGGCCAAATGTCAATTCAGCACGCTTAATTGTTGTGACAATTGCCAATACAATGG
ATTTACCTGAGAGAATATTGATGGGAAAAGTTACTTCACGTTTGGGATTAACTCGTTTAA
CTTTTCAACCATATTCACATAAACAGCTGCAAGAAATTGTCATTTCTCGCCTCAGTGGTC
TTGATTCATTCAATAATGATGCAATTCAATTAGTTGCAAGAAAAGTTGCTGCACTCTCTG
GTGATGCTAGACGTGCTCTTGATATTTGTCGTCGCTCATCTGAGATTGCTGAGGTAGAAG
CAAAAAATAATGGGAATAAAGCTTTTGTTGCAATGACACACGTTCAACAGGCACTCAATG
AGATGATTTCATGTACCAAAGTAAAAGCAGTTAAAGCGTGCTCAAAAATGGAAAAATATT
TTTTACAAGCCGTATGTATGGAAGTCGAACGAACTGGCTTAGAAGAAGTGACTTTTTATG
GAGTATATAAGCAAATGAAAACAGTTACAACTCTCAATGGATTACCGCTCCCAACAACAG
CAACTGCACTAGCTATTTCTATGCGATTGGGTGCATCTCGTCTTATAATCTCAGAACACA
CACGTAAAGATATTTATCAGAAAATTCTACTTAATATAAATGTCGACGATTTCTATTATG
CAACACAAGTAAGACTAAATGATGAGGAATAG
>g11056.t2 Gene=g11056 Length=298
MRITEPRKAYVEIYRQLSGKTVTAEQAYNLLDKRFTTTSKSSRRISTILLVDELDILCNK
RQDVVYNLLNWPNVNSARLIVVTIANTMDLPERILMGKVTSRLGLTRLTFQPYSHKQLQE
IVISRLSGLDSFNNDAIQLVARKVAALSGDARRALDICRRSSEIAEVEAKNNGNKAFVAM
THVQQALNEMISCTKVKAVKACSKMEKYFLQAVCMEVERTGLEEVTFYGVYKQMKTVTTL
NGLPLPTTATALAISMRLGASRLIISEHTRKDIYQKILLNINVDDFYYATQVRLNDEE
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 6 | g11056.t2 | Gene3D | G3DSA:3.40.50.300 | - | 1 | 111 | 0e+00 |
| 7 | g11056.t2 | Gene3D | G3DSA:1.10.8.1280 | - | 112 | 214 | 0e+00 |
| 3 | g11056.t2 | PANTHER | PTHR10763:SF23 | ORIGIN RECOGNITION COMPLEX SUBUNIT 1 | 1 | 291 | 0e+00 |
| 4 | g11056.t2 | PANTHER | PTHR10763 | CELL DIVISION CONTROL PROTEIN 6-RELATED | 1 | 291 | 0e+00 |
| 1 | g11056.t2 | Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 17 | 104 | 3e-07 |
| 2 | g11056.t2 | Pfam | PF17872 | AAA lid domain | 132 | 167 | 0e+00 |
| 5 | g11056.t2 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 19 | 184 | 0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
