General information for g11067.t1
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Exopolyphosphatase PRUNE1.
Parent gene
- The parent gene g11067 is located on chr_1: 13766456..13767690 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11067 | g11067.t1 | TTS | g11067.t1 | 13766345 | 13766345 |
| chr_1 | g11067 | g11067.t1 | isoform | g11067.t1 | 13766456 | 13767690 |
| chr_1 | g11067 | g11067.t1 | exon | g11067.t1.exon1 | 13766456 | 13767343 |
| chr_1 | g11067 | g11067.t1 | cds | g11067.t1.CDS1 | 13766456 | 13767343 |
| chr_1 | g11067 | g11067.t1 | exon | g11067.t1.exon2 | 13767403 | 13767542 |
| chr_1 | g11067 | g11067.t1 | cds | g11067.t1.CDS2 | 13767403 | 13767542 |
| chr_1 | g11067 | g11067.t1 | exon | g11067.t1.exon3 | 13767594 | 13767690 |
| chr_1 | g11067 | g11067.t1 | cds | g11067.t1.CDS3 | 13767594 | 13767690 |
| chr_1 | g11067 | g11067.t1 | TSS | g11067.t1 | 13767756 | 13767756 |
Sequences
>g11067.t1 Gene=g11067 Length=1125
ATGAATTCTTATCTAAAACAAGTAAAATCATTTGTCAATAAAAGAACAGACATTTTGGCA
GTGATGGGAAATGAGAGCGTTGATTTAGATTCTGCTGTTTCATCAATTTCACTCGCATTT
CATTTAAATAAATTTGGAATGTCATCTCGAGTTATTCCAACAGATAAAAGAAGGAAAAGT
TATCAAGTTCTACCTATTGTCAATTGCAAAAAAGAAGAATTACCACTGAAAACTGAAGTA
ACACACTGGCTAAAAAAGCACAATGTCGAATTAGGAAATTTAATTTGCAAAGATGAAATT
AACATTGAGAAAAATGTTGAAAACTTCATTCTAGTCGATCATCATGTTTCTCCATTCCAT
GAAAAAGTAATTTCCGTACTGGATCATCGTCCTTATGATGAAAAGTCAATTTTAGATGAG
GAATGCGCTGTCAACATTCAAGAAGTTGCTTCCTGTGCCACATTGATTGTTGAAGCACTT
AAAAGTGACGTTGGTTCTGATGGTCTGAATTCCTATAAAGAAATTCTTCAATTACTCTAC
GGTGCAATTGTGCTTGACTCCATTAATTTCTCAAGAGAGGCTGACAAAGTTCGTGATTTA
GATTTTGAAATGGCTGAACTGATTGAGAGAAAATTAAATATGGATGATATTATGACAACA
CGCAAGTCACTTTTTGATGAATTAGTTGAAGCTCGTGCTGACGTTAGTGCTCTTGATTCA
TTACAGATCCTCTCAAAAGATCTCAAAATTATTGCCAACAAAAATTCCTCAGTTCGTATT
GCTATTCCTGGTGTTTTAGTTTTTGCTTATACTGAAATGCCAAATGCAGCAGAGAATTTA
CAAATTTTTGCTGAAAGAGAAAATATTGATGTGGTTGTACTGATGGGTATGAAGCCTGTT
GGTAATACTGTGGAACGTCATCTTGGTGTGATAAACATTAAAAATAAACCACTCTATAAT
GACATTTTAAATACTGTGAAGTCAATGACTAATCCTGAATTACATTTAAATTATCAATCA
CAAGTGCAACTTCTTGATGGTGAATTTTTTATTCAAGAAAATGTCAAAGCAAGTCGAAAA
CAAATTTTACCAGTACTCAAAGAACTGTTACAAAATAATTATTAA
>g11067.t1 Gene=g11067 Length=374
MNSYLKQVKSFVNKRTDILAVMGNESVDLDSAVSSISLAFHLNKFGMSSRVIPTDKRRKS
YQVLPIVNCKKEELPLKTEVTHWLKKHNVELGNLICKDEINIEKNVENFILVDHHVSPFH
EKVISVLDHRPYDEKSILDEECAVNIQEVASCATLIVEALKSDVGSDGLNSYKEILQLLY
GAIVLDSINFSREADKVRDLDFEMAELIERKLNMDDIMTTRKSLFDELVEARADVSALDS
LQILSKDLKIIANKNSSVRIAIPGVLVFAYTEMPNAAENLQIFAERENIDVVVLMGMKPV
GNTVERHLGVINIKNKPLYNDILNTVKSMTNPELHLNYQSQVQLLDGEFFIQENVKASRK
QILPVLKELLQNNY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g11067.t1 | Gene3D | G3DSA:3.90.1640.10 | - | 1 | 233 | 0.0e+00 |
| 7 | g11067.t1 | Gene3D | G3DSA:3.10.310.20 | - | 234 | 373 | 0.0e+00 |
| 3 | g11067.t1 | PANTHER | PTHR12112 | BNIP - RELATED | 17 | 370 | 0.0e+00 |
| 4 | g11067.t1 | PANTHER | PTHR12112:SF44 | EG:152A3.5 PROTEIN (FBGN0003116,PN PROTEIN) | 17 | 370 | 0.0e+00 |
| 2 | g11067.t1 | Pfam | PF01368 | DHH family | 20 | 183 | 1.3e-06 |
| 1 | g11067.t1 | Pfam | PF02833 | DHHA2 domain | 226 | 368 | 0.0e+00 |
| 6 | g11067.t1 | SMART | SM01131 | DHHA2_2 | 225 | 370 | 0.0e+00 |
| 5 | g11067.t1 | SUPERFAMILY | SSF64182 | DHH phosphoesterases | 17 | 370 | 0.0e+00 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016462 | pyrophosphatase activity | MF |
| GO:0005737 | cytoplasm | CC |
KEGG
Orthology
- This transcript has been annotated with K01514 (exopolyphosphatase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
