General information for g11067.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as hypothetical.
Parent gene
- The parent gene g11067 is located on chr_1: 13766456..13767690 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11067 | g11067.t2 | TTS | g11067.t2 | 13766345 | 13766345 |
| chr_1 | g11067 | g11067.t2 | isoform | g11067.t2 | 13766456 | 13767343 |
| chr_1 | g11067 | g11067.t2 | exon | g11067.t2.exon1 | 13766456 | 13767343 |
| chr_1 | g11067 | g11067.t2 | cds | g11067.t2.CDS1 | 13766456 | 13766971 |
| chr_1 | g11067 | g11067.t2 | TSS | g11067.t2 | 13767756 | 13767756 |
Sequences
>g11067.t2 Gene=g11067 Length=888
GTAACACACTGGCTAAAAAAGCACAATGTCGAATTAGGAAATTTAATTTGCAAAGATGAA
ATTAACATTGAGAAAAATGTTGAAAACTTCATTCTAGTCGATCATCATGTTTCTCCATTC
CATGAAAAAGTAATTTCCGTACTGGATCATCGTCCTTATGATGAAAAGTCAATTTTAGAT
GAGGAATGCGCTGTCAACATTCAAGAAGTTGCTTCCTGTGCCACATTGATTGTTGAAGCA
CTTAAAAGTGACGTTGGTTCTGATGGTCTGAATTCCTATAAAGAAATTCTTCAATTACTC
TACGGTGCAATTGTGCTTGACTCCATTAATTTCTCAAGAGAGGCTGACAAAGTTCGTGAT
TTAGATTTTGAAATGGCTGAACTGATTGAGAGAAAATTAAATATGGATGATATTATGACA
ACACGCAAGTCACTTTTTGATGAATTAGTTGAAGCTCGTGCTGACGTTAGTGCTCTTGAT
TCATTACAGATCCTCTCAAAAGATCTCAAAATTATTGCCAACAAAAATTCCTCAGTTCGT
ATTGCTATTCCTGGTGTTTTAGTTTTTGCTTATACTGAAATGCCAAATGCAGCAGAGAAT
TTACAAATTTTTGCTGAAAGAGAAAATATTGATGTGGTTGTACTGATGGGTATGAAGCCT
GTTGGTAATACTGTGGAACGTCATCTTGGTGTGATAAACATTAAAAATAAACCACTCTAT
AATGACATTTTAAATACTGTGAAGTCAATGACTAATCCTGAATTACATTTAAATTATCAA
TCACAAGTGCAACTTCTTGATGGTGAATTTTTTATTCAAGAAAATGTCAAAGCAAGTCGA
AAACAAATTTTACCAGTACTCAAAGAACTGTTACAAAATAATTATTAA
>g11067.t2 Gene=g11067 Length=171
MAELIERKLNMDDIMTTRKSLFDELVEARADVSALDSLQILSKDLKIIANKNSSVRIAIP
GVLVFAYTEMPNAAENLQIFAERENIDVVVLMGMKPVGNTVERHLGVINIKNKPLYNDIL
NTVKSMTNPELHLNYQSQVQLLDGEFFIQENVKASRKQILPVLKELLQNNY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g11067.t2 | Gene3D | G3DSA:3.10.310.20 | - | 31 | 170 | 0e+00 |
| 1 | g11067.t2 | Pfam | PF02833 | DHHA2 domain | 23 | 165 | 0e+00 |
| 3 | g11067.t2 | SMART | SM01131 | DHHA2_2 | 22 | 167 | 0e+00 |
| 2 | g11067.t2 | SUPERFAMILY | SSF64182 | DHH phosphoesterases | 18 | 167 | 3e-07 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0016462 | pyrophosphatase activity | MF |
| GO:0005737 | cytoplasm | CC |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
