General information for g11097.t7
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Formin-binding protein 1-like protein.
Parent gene
- The parent gene g11097 is located on chr_1: 14033940..14035243 (+ strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11097 | g11097.t7 | isoform | g11097.t7 | 14027347 | 14030544 |
| chr_1 | g11097 | g11097.t7 | exon | g11097.t7.exon1 | 14027347 | 14027462 |
| chr_1 | g11097 | g11097.t7 | exon | g11097.t7.exon2 | 14029483 | 14029539 |
| chr_1 | g11097 | g11097.t7 | exon | g11097.t7.exon3 | 14029681 | 14030295 |
| chr_1 | g11097 | g11097.t7 | cds | g11097.t7.CDS1 | 14030009 | 14030295 |
| chr_1 | g11097 | g11097.t7 | exon | g11097.t7.exon4 | 14030358 | 14030544 |
| chr_1 | g11097 | g11097.t7 | cds | g11097.t7.CDS2 | 14030358 | 14030544 |
| chr_1 | g11097 | g11097.t7 | TSS | g11097.t7 | NA | NA |
| chr_1 | g11097 | g11097.t7 | TTS | g11097.t7 | NA | NA |
Sequences
>g11097.t7 Gene=g11097 Length=975
GATCAATTTGGGAATATAGCAGCACACACATTAAAGGGAATCGAATTTCTTGACAAGTAT
GGAAACTTTGTGAAAGATCGCTGTGCCATTGAATTCGAATATGCATCAAAATTGAGACGA
CTCGCAAAGAATTATCAACCAAAAGGAAAGAAAGGAGATGACGAAGATAATGAATTCACA
TCACATCAAGCATTCAAAAGTGTGCTCAAAGAAACAAATGATTTAGCTGGGCAGCGAGAA
GTTGTAGCAGAAAATCTTCAATCGCAAGTCATTGCTGGTATTAATCTACTTTCAAAAACG
CTGCGTGAAGAAAGAAAAAAGAGTCTTCAAGAAGGCACAGATCTCCAACAGAATTTAACA
GCTCAATTGGCTGCACTCGATCGAGCAAAAAAGAATTATGAAAAGGCTTATCGTGAGGCG
GAAAAGGCAGTAGAAAATTATCAAAAAGCAGACGCAGATTTTAATCTTAGTCGAGCGGAA
GTAGAAAAACAGCGACATAATATGACATTTAAATGTGCTCAATCAGATGATGCCAAAAAT
GAATATGCCAATCAATTACAGAAGTCAAATAAACTTCAATATTCACATTTTCACACATCA
TTACCTGCGGTATTTAATAAATTACAAGAATTAGACGAGAAACGGACGCAAGGACTAAAA
GAGTTCATTAAACAAGCGGCTGAAGTTGAATCACAAGTCGCACCAATTATTGCACGATGC
CTTGAAGGTATAGTGCGAGCATCAGAATCAATAAAAGAAAAGGAAGATTCAATAAAAGTG
ATAGAAAGATATCAATCAGGGTTTCAACCACCAAACGATATTCCGTTTGAAGATCTTTCC
AAAGCAGATAACGAGTCATCACACAATTCACAAATTAATTATGCCATGAATAATAATGCA
ACGATGAAAGGAACAATCGGTGGTAAAGGACTTAAAAAGCGTGTAGGAATATTCAACATT
TTTAGTAGCAATAAA
>g11097.t7 Gene=g11097 Length=158
MTFKCAQSDDAKNEYANQLQKSNKLQYSHFHTSLPAVFNKLQELDEKRTQGLKEFIKQAA
EVESQVAPIIARCLEGIVRASESIKEKEDSIKVIERYQSGFQPPNDIPFEDLSKADNESS
HNSQINYAMNNNATMKGTIGGKGLKKRVGIFNIFSSNK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 4 | g11097.t7 | Gene3D | G3DSA:1.20.1270.60 | Arfaptin | 4 | 125 | 0.000 |
| 1 | g11097.t7 | PANTHER | PTHR23065 | PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 | 1 | 156 | 0.000 |
| 2 | g11097.t7 | PANTHER | PTHR23065:SF47 | FORMIN-BINDING PROTEIN 1-LIKE PROTEIN | 1 | 156 | 0.000 |
| 5 | g11097.t7 | ProSiteProfiles | PS51741 | F-BAR domain profile. | 1 | 89 | 13.647 |
| 3 | g11097.t7 | SUPERFAMILY | SSF103657 | BAR/IMD domain-like | 7 | 111 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
There are no GO annotations for this transcript.
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
