Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein cognate 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11137 g11137.t1 TTS g11137.t1 14302528 14302528
chr_1 g11137 g11137.t1 isoform g11137.t1 14302645 14304725
chr_1 g11137 g11137.t1 exon g11137.t1.exon1 14302645 14304392
chr_1 g11137 g11137.t1 cds g11137.t1.CDS1 14302645 14304392
chr_1 g11137 g11137.t1 exon g11137.t1.exon2 14304518 14304725
chr_1 g11137 g11137.t1 cds g11137.t1.CDS2 14304518 14304725
chr_1 g11137 g11137.t1 TSS g11137.t1 14305607 14305607

Sequences

>g11137.t1 Gene=g11137 Length=1956
ATGGCCGCAAAAGCTCCAGCAGTTGGTATTGATTTGGGTACAACTTACTCGTGTGTCGGA
GTTTTCCAACACGGTAAAGTTGAAATTATTGCCAACGATCAAGGAAACCGTACGACTCCA
TCGTATGTCGCATTTACTGATACTGAAAGATTAATTGGTGATGCTGCCAAGAATCAAGTT
GCAATGAATCCAACAAACACCATTTTTGATGCTAAACGTTTGATTGGTCGCAAATTCGAT
GACCCAGCAGTTCAATCAGACATGAAGCACTGGCCATTCGAAGTTGTCAGTGTTGAGGGA
AAGCCTAAAATCAAGGTTACTTATAAGGATGAAGTAAAGACTTTCTTCCCTGAAGAAATT
AGTTCAATGGTTTTGGTTAAAATGAAGGAAACTGCTGAGGCCTATTTGGGCAAGACTGTA
ACAAATGCAGTCATTACTGTTCCAGCTTACTTCAATGACTCGCAACGTCAAGCAACAAAG
GATTCTGGTACCATCTCAGGATTAAATGTTTTGCGTATTATTAACGAACCAACAGCTGCT
GCTATTGCCTATGGTCTCGATAAGAAGGCTGCAGGTGAACGCAATGTTTTGATTTTCGAT
TTGGGCGGTGGTACATTTGATGTTTCAATTCTTTCAATTGATGATGGAATTTTTGAAGTA
AAGTCGACAGCCGGTGACACTCATCTTGGTGGTGAAGATTTTGATAATCGCCTCGTTAAT
CATTTTGCACAAGAGTTCAAACGTAAGCATAAAAAGGATTTGACTTCTAACAAGCGTGCA
CTTCGACGTCTTAGAACAGCTTGTGAGCGTGCAAAGAGAACTTTGTCAAGCTCGACTCAA
GCCAGTATTGAAATTGATTCATTGTTCGAGGGTATTGATTTCTACACTTCAATTACTCGT
GCACGTTTCGAAGAGTTGAATGCTGATCTCTTCCGTTCAACAATGGAGCCAGTTGAAAAA
GCTATCCGTGATGCTAAAATGGACAAAGGAACAATTCATGATATCGTTCTTGTCGGTGGC
TCAACTCGTATTCCAAAAGTTCAAAAATTACTTCAAGACTTCTTTAACGGCAAAGAGTTG
AACAAATCAATTAATCCCGATGAGGCCGTCGCTTATGGTGCTGCTGTTCAAGCTGCCATT
TTGCACGGAGACAAGAGCGAAGAAGTTCAAGACTTGCTTCTTTTGGACGTTACTCCATTG
TCACTCGGTATTGAAACAGCTGGTGGTGTCATGAGCGTTTTGATTAAACGTAATACAACA
ATTCCAACCAAGCAAACTCAAACTTTCACCACCTATTCAGATAATCAACCAGGAGTATTG
ATTCAAGTATTTGAAGGCGAACGTGCTATGACCAAGGATAACAATCTTCTCGGTAAATTC
GAACTTGCCGGTATTCCTCCTGCTCCACGCGGTGTCCCACAAATTGAAGTTACATTTGAT
ATCGATGCAAACGGTATTTTGAATGTTACTGCTTTGGAAAAATCAACAAATAAGGAAAAC
AAGATCACAATTACAAACGACAAGGGACGTTTGAGCAAAGAAGATATCGAACGTATGGTT
AATGAAGCTGAGAAATACCGTTCAGAGGATGATGCACAAAAAGATCGCATTGCAGCCAAG
AACGGTTTGGAATCATACTGCTTCAACATGAAGGCTACAATGGAAGATGATAAATTGAAG
GATAAGATCTCTGAAAGTGACAAGAAGACCATTTTGGACAAATGCAATGATACTATTAAA
TGGCTCGATGCAAATCAATTGGGTGAAAAGGAAGAATATGAACACCGTCAAAAAGAATTA
GAAGGAATTTGCAATCCAATTATCACTAAATTATATCAATCTGCTGGTGGTGCTCCTGGT
GGTATGCCTGGCTTCCCTGGAGCTGGTGCAGCTGGCGGTGGCGGCGCAGCAGGAGCTGGT
GCAGGATCAGGTCCAACAATTGAAGAAGTCGACTAA

>g11137.t1 Gene=g11137 Length=651
MAAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV
AMNPTNTIFDAKRLIGRKFDDPAVQSDMKHWPFEVVSVEGKPKIKVTYKDEVKTFFPEEI
SSMVLVKMKETAEAYLGKTVTNAVITVPAYFNDSQRQATKDSGTISGLNVLRIINEPTAA
AIAYGLDKKAAGERNVLIFDLGGGTFDVSILSIDDGIFEVKSTAGDTHLGGEDFDNRLVN
HFAQEFKRKHKKDLTSNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITR
ARFEELNADLFRSTMEPVEKAIRDAKMDKGTIHDIVLVGGSTRIPKVQKLLQDFFNGKEL
NKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMSVLIKRNTT
IPTKQTQTFTTYSDNQPGVLIQVFEGERAMTKDNNLLGKFELAGIPPAPRGVPQIEVTFD
IDANGILNVTALEKSTNKENKITITNDKGRLSKEDIERMVNEAEKYRSEDDAQKDRIAAK
NGLESYCFNMKATMEDDKLKDKISESDKKTILDKCNDTIKWLDANQLGEKEEYEHRQKEL
EGICNPIITKLYQSAGGAPGGMPGFPGAGAAGGGGAAGAGAGSGPTIEEVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
23 g11137.t1 CDD cd10233 HSPA1-2_6-8-like_NBD 7 382 0.0
20 g11137.t1 Gene3D G3DSA:3.30.420.40 - 8 379 9.4E-182
21 g11137.t1 Gene3D G3DSA:3.30.30.30 - 69 115 9.4E-182
19 g11137.t1 Gene3D G3DSA:3.30.420.40 - 189 366 9.4E-182
18 g11137.t1 Gene3D G3DSA:3.90.640.10 Actin; Chain A 230 307 9.4E-182
17 g11137.t1 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 381 510 5.1E-66
22 g11137.t1 Gene3D G3DSA:1.20.1270.10 - 511 614 2.7E-39
27 g11137.t1 MobiDBLite mobidb-lite consensus disorder prediction 631 651 -
2 g11137.t1 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 1 619 0.0
3 g11137.t1 PANTHER PTHR19375:SF382 HEAT SHOCK-RELATED 70 KDA PROTEIN 2 1 619 0.0
8 g11137.t1 PRINTS PR00301 70kDa heat shock protein signature 6 19 1.4E-88
9 g11137.t1 PRINTS PR00301 70kDa heat shock protein signature 34 46 1.4E-88
12 g11137.t1 PRINTS PR00301 70kDa heat shock protein signature 56 64 1.4E-88
11 g11137.t1 PRINTS PR00301 70kDa heat shock protein signature 143 163 1.4E-88
6 g11137.t1 PRINTS PR00301 70kDa heat shock protein signature 204 214 1.4E-88
5 g11137.t1 PRINTS PR00301 70kDa heat shock protein signature 332 348 1.4E-88
7 g11137.t1 PRINTS PR00301 70kDa heat shock protein signature 364 384 1.4E-88
10 g11137.t1 PRINTS PR00301 70kDa heat shock protein signature 391 410 1.4E-88
4 g11137.t1 PRINTS PR00301 70kDa heat shock protein signature 472 488 1.4E-88
1 g11137.t1 Pfam PF00012 Hsp70 protein 7 613 4.0E-261
24 g11137.t1 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 10 17 -
26 g11137.t1 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 198 211 -
25 g11137.t1 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 335 349 -
16 g11137.t1 SUPERFAMILY SSF53067 Actin-like ATPase domain 7 188 5.44E-72
15 g11137.t1 SUPERFAMILY SSF53067 Actin-like ATPase domain 192 383 3.3E-70
14 g11137.t1 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 387 544 3.66E-64
13 g11137.t1 SUPERFAMILY SSF100934 Heat shock protein 70kD (HSP70), C-terminal subdomain 539 620 3.01E-32

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

Pathway

  • This transcript belongs to the following pathways

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values