Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein cognate 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11137 g11137.t10 TTS g11137.t10 14302528 14302528
chr_1 g11137 g11137.t10 isoform g11137.t10 14302645 14303997
chr_1 g11137 g11137.t10 exon g11137.t10.exon1 14302645 14303076
chr_1 g11137 g11137.t10 cds g11137.t10.CDS1 14302645 14303076
chr_1 g11137 g11137.t10 exon g11137.t10.exon2 14303275 14303997
chr_1 g11137 g11137.t10 cds g11137.t10.CDS2 14303275 14303658
chr_1 g11137 g11137.t10 TSS g11137.t10 NA NA

Sequences

>g11137.t10 Gene=g11137 Length=1155
GGCGGTGGTACATTTGATGTTTCAATTCTTTCAATTGATGATGGAATTTTTGAAGTAAAG
TCGACAGCCGGTGACACTCATCTTGGTGGTGAAGATTTTGATAATCGCCTCGTTAATCAT
TTTGCACAAGAGTTCAAACGTAAGCATAAAAAGGATTTGACTTCTAACAAGCGTGCACTT
CGACGTCTTAGAACAGCTTGTGAGCGTGCAAAGAGAACTTTGTCAAGCTCGACTCAAGCC
AGTATTGAAATTGATTCATTGTTCGAGGGTATTGATTTCTACACTTCAATTACTCGTGCA
CGTTTCGAAGAGTTGAATGCTGATCTCTTCCGTTCAACAATGGAGCCAGTTGAAAAAGCT
ATCCGTGATGCTAAAATGGACAAAGGAACAATTCATGATATCGTTCTTGTCGGTGGCTCA
ACTCGTATTCCAAAAGTTCAAAAATTACTTCAAGACTTCTTTAACGGCAAAGAGTTGAAC
AAATCAATTAATCCCGATGAGGCCGTCGCTTATGGTGCTGCTGTTCAAGCTGCCATTTTG
CACGGAGACAAGAGCGAAGAAGTTCAAGACTTGCTTCTTTTGGACGTTACTCCATTGTCA
CTCGGTATTGAAACAGCTGGTGGTGTCATGAGCGTTTTGATTAAACGTAATACAACAATT
CCAACCAAGCAAACTCAAACTTTCACCACCTATTCAGATAATCAACCAGGAGTATTGATT
CAAGGACGTTTGAGCAAAGAAGATATCGAACGTATGGTTAATGAAGCTGAGAAATACCGT
TCAGAGGATGATGCACAAAAAGATCGCATTGCAGCCAAGAACGGTTTGGAATCATACTGC
TTCAACATGAAGGCTACAATGGAAGATGATAAATTGAAGGATAAGATCTCTGAAAGTGAC
AAGAAGACCATTTTGGACAAATGCAATGATACTATTAAATGGCTCGATGCAAATCAATTG
GGTGAAAAGGAAGAATATGAACACCGTCAAAAAGAATTAGAAGGAATTTGCAATCCAATT
ATCACTAAATTATATCAATCTGCTGGTGGTGCTCCTGGTGGTATGCCTGGCTTCCCTGGA
GCTGGTGCAGCTGGCGGTGGCGGCGCAGCAGGAGCTGGTGCAGGATCAGGTCCAACAATT
GAAGAAGTCGACTAA

>g11137.t10 Gene=g11137 Length=271
MEPVEKAIRDAKMDKGTIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA
AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMSVLIKRNTTIPTKQTQTFTTYSD
NQPGVLIQGRLSKEDIERMVNEAEKYRSEDDAQKDRIAAKNGLESYCFNMKATMEDDKLK
DKISESDKKTILDKCNDTIKWLDANQLGEKEEYEHRQKELEGICNPIITKLYQSAGGAPG
GMPGFPGAGAAGGGGAAGAGAGSGPTIEEVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g11137.t10 Gene3D G3DSA:3.30.420.40 - 1 47 2.6E-19
15 g11137.t10 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 62 129 4.3E-27
17 g11137.t10 Gene3D G3DSA:1.20.1270.10 - 131 234 5.4E-40
14 g11137.t10 MobiDBLite mobidb-lite consensus disorder prediction 251 271 -
4 g11137.t10 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 1 128 4.2E-123
6 g11137.t10 PANTHER PTHR19375:SF210 HEAT SHOCK 70 KDA PROTEIN 1-LIKE 1 128 4.2E-123
3 g11137.t10 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 128 243 4.2E-123
5 g11137.t10 PANTHER PTHR19375:SF210 HEAT SHOCK 70 KDA PROTEIN 1-LIKE 128 243 4.2E-123
7 g11137.t10 PRINTS PR00301 70kDa heat shock protein signature 18 34 2.4E-35
8 g11137.t10 PRINTS PR00301 70kDa heat shock protein signature 50 70 2.4E-35
9 g11137.t10 PRINTS PR00301 70kDa heat shock protein signature 77 96 2.4E-35
1 g11137.t10 Pfam PF00012 Hsp70 protein 1 128 1.0E-51
2 g11137.t10 Pfam PF00012 Hsp70 protein 130 233 2.0E-13
13 g11137.t10 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 21 35 -
12 g11137.t10 SUPERFAMILY SSF53067 Actin-like ATPase domain 2 69 3.41E-21
11 g11137.t10 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 73 164 2.09E-25
10 g11137.t10 SUPERFAMILY SSF100934 Heat shock protein 70kD (HSP70), C-terminal subdomain 159 240 6.93E-33

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values