Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein cognate 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11137 g11137.t12 TTS g11137.t12 14302528 14302528
chr_1 g11137 g11137.t12 isoform g11137.t12 14302645 14304117
chr_1 g11137 g11137.t12 exon g11137.t12.exon1 14302645 14303300
chr_1 g11137 g11137.t12 cds g11137.t12.CDS1 14302645 14303300
chr_1 g11137 g11137.t12 exon g11137.t12.exon2 14303376 14304117
chr_1 g11137 g11137.t12 cds g11137.t12.CDS2 14303376 14303658
chr_1 g11137 g11137.t12 TSS g11137.t12 NA NA

Sequences

>g11137.t12 Gene=g11137 Length=1398
TCTGGTACCATCTCAGGATTAAATGTTTTGCGTATTATTAACGAACCAACAGCTGCTGCT
ATTGCCTATGGTCTCGATAAGAAGGCTGCAGGTGAACGCAATGTTTTGATTTTCGATTTG
GGCGGTGGTACATTTGATGTTTCAATTCTTTCAATTGATGATGGAATTTTTGAAGTAAAG
TCGACAGCCGGTGACACTCATCTTGGTGGTGAAGATTTTGATAATCGCCTCGTTAATCAT
TTTGCACAAGAGTTCAAACGTAAGCATAAAAAGGATTTGACTTCTAACAAGCGTGCACTT
CGACGTCTTAGAACAGCTTGTGAGCGTGCAAAGAGAACTTTGTCAAGCTCGACTCAAGCC
AGTATTGAAATTGATTCATTGTTCGAGGGTATTGATTTCTACACTTCAATTACTCGTGCA
CGTTTCGAAGAGTTGAATGCTGATCTCTTCCGTTCAACAATGGAGCCAGTTGAAAAAGCT
ATCCGTGATGCTAAAATGGACAAAGGAACAATTCATGATATCGTTCTTGTCGGTGGCTCA
ACTCGTATTCCAAAAGTTCAAAAATTACTTCAAGACTTCTTTAACGGCAAAGAGTTGAAC
AAATCAATTAATCCCGATGAGGCCGTCGCTTATGGTGCTGCTGTTCAAGCTGCCATTTTG
CACGGAGACAAGAGCGAAGAAGTTCAAGACTTGCTTCTTTTGGACGTTACTCCATTGTCA
CTCGGTATTGAAACAGCTGGTGATAATCAACCAGGAGTATTGATTCAAGTATTTGAAGGC
GAACGTGCTATGACCAAGGATAACAATCTTCTCGGTAAATTCGAACTTGCCGGTATTCCT
CCTGCTCCACGCGGTGTCCCACAAATTGAAGTTACATTTGATATCGATGCAAACGGTATT
TTGAATGTTACTGCTTTGGAAAAATCAACAAATAAGGAAAACAAGATCACAATTACAAAC
GACAAGGGACGTTTGAGCAAAGAAGATATCGAACGTATGGTTAATGAAGCTGAGAAATAC
CGTTCAGAGGATGATGCACAAAAAGATCGCATTGCAGCCAAGAACGGTTTGGAATCATAC
TGCTTCAACATGAAGGCTACAATGGAAGATGATAAATTGAAGGATAAGATCTCTGAAAGT
GACAAGAAGACCATTTTGGACAAATGCAATGATACTATTAAATGGCTCGATGCAAATCAA
TTGGGTGAAAAGGAAGAATATGAACACCGTCAAAAAGAATTAGAAGGAATTTGCAATCCA
ATTATCACTAAATTATATCAATCTGCTGGTGGTGCTCCTGGTGGTATGCCTGGCTTCCCT
GGAGCTGGTGCAGCTGGCGGTGGCGGCGCAGCAGGAGCTGGTGCAGGATCAGGTCCAACA
ATTGAAGAAGTCGACTAA

>g11137.t12 Gene=g11137 Length=312
MEPVEKAIRDAKMDKGTIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA
AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGDNQPGVLIQVFEGERAMTKDNNLLGK
FELAGIPPAPRGVPQIEVTFDIDANGILNVTALEKSTNKENKITITNDKGRLSKEDIERM
VNEAEKYRSEDDAQKDRIAAKNGLESYCFNMKATMEDDKLKDKISESDKKTILDKCNDTI
KWLDANQLGEKEEYEHRQKELEGICNPIITKLYQSAGGAPGGMPGFPGAGAAGGGGAAGA
GAGSGPTIEEVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
18 g11137.t12 Gene3D G3DSA:3.30.420.40 - 1 52 1.3E-25
17 g11137.t12 Gene3D G3DSA:3.30.420.40 - 53 63 1.3E-25
15 g11137.t12 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 64 93 9.9E-6
16 g11137.t12 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 94 171 1.5E-37
19 g11137.t12 Gene3D G3DSA:1.20.1270.10 - 172 275 7.3E-40
14 g11137.t12 MobiDBLite mobidb-lite consensus disorder prediction 292 312 -
2 g11137.t12 PANTHER PTHR19375:SF458 SI:CH211-199O1.2 1 94 6.2E-152
4 g11137.t12 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 1 94 6.2E-152
3 g11137.t12 PANTHER PTHR19375:SF458 SI:CH211-199O1.2 95 283 6.2E-152
5 g11137.t12 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 95 283 6.2E-152
7 g11137.t12 PRINTS PR00301 70kDa heat shock protein signature 18 34 3.0E-44
8 g11137.t12 PRINTS PR00301 70kDa heat shock protein signature 50 70 3.0E-44
9 g11137.t12 PRINTS PR00301 70kDa heat shock protein signature 77 96 3.0E-44
6 g11137.t12 PRINTS PR00301 70kDa heat shock protein signature 133 149 3.0E-44
1 g11137.t12 Pfam PF00012 Hsp70 protein 92 274 1.0E-50
13 g11137.t12 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 21 35 -
12 g11137.t12 SUPERFAMILY SSF53067 Actin-like ATPase domain 2 69 4.37E-21
11 g11137.t12 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 73 205 1.57E-48
10 g11137.t12 SUPERFAMILY SSF100934 Heat shock protein 70kD (HSP70), C-terminal subdomain 200 281 9.16E-33

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values