Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein cognate 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11137 g11137.t15 TTS g11137.t15 14302528 14302528
chr_1 g11137 g11137.t15 isoform g11137.t15 14302645 14305628
chr_1 g11137 g11137.t15 exon g11137.t15.exon1 14302645 14303573
chr_1 g11137 g11137.t15 cds g11137.t15.CDS1 14302645 14303573
chr_1 g11137 g11137.t15 exon g11137.t15.exon2 14303703 14304392
chr_1 g11137 g11137.t15 cds g11137.t15.CDS2 14303703 14304392
chr_1 g11137 g11137.t15 exon g11137.t15.exon3 14304518 14304554
chr_1 g11137 g11137.t15 cds g11137.t15.CDS3 14304518 14304542
chr_1 g11137 g11137.t15 exon g11137.t15.exon4 14304617 14304725
chr_1 g11137 g11137.t15 exon g11137.t15.exon5 14305475 14305628
chr_1 g11137 g11137.t15 TSS g11137.t15 14305607 14305607

Sequences

>g11137.t15 Gene=g11137 Length=1919
CCGAAAGTTGCCGAAGATTTCAGTTTGAGTCAAAAATTCAAGTCGATAAGTTGCATTCTA
ATTAAGAGCAGATCTCAAGTCCTTAAAACTATATTTTATAAGTGATTATAAACTTACATT
TTGATAAATTAACTAATTAAAACTACAAATAAAGATGGCCGCAAAAGCTCCAGCAGTTGG
TATTGATTTGGGTACAACTTACTCGTGTGTCGGAGTTTTCCAACACGGTAAAGTTGAAAT
TATTGCCAACGATCAAGGAAACCAATCAAGTTGCAATGAATCCAACAAACACCATTTTTG
ATGCTAAACGTTTGATTGGTCGCAAATTCGATGACCCAGCAGTTCAATCAGACATGAAGC
ACTGGCCATTCGAAGTTGTCAGTGTTGAGGGAAAGCCTAAAATCAAGGTTACTTATAAGG
ATGAAGTAAAGACTTTCTTCCCTGAAGAAATTAGTTCAATGGTTTTGGTTAAAATGAAGG
AAACTGCTGAGGCCTATTTGGGCAAGACTGTAACAAATGCAGTCATTACTGTTCCAGCTT
ACTTCAATGACTCGCAACGTCAAGCAACAAAGGATTCTGGTACCATCTCAGGATTAAATG
TTTTGCGTATTATTAACGAACCAACAGCTGCTGCTATTGCCTATGGTCTCGATAAGAAGG
CTGCAGGTGAACGCAATGTTTTGATTTTCGATTTGGGCGGTGGTACATTTGATGTTTCAA
TTCTTTCAATTGATGATGGAATTTTTGAAGTAAAGTCGACAGCCGGTGACACTCATCTTG
GTGGTGAAGATTTTGATAATCGCCTCGTTAATCATTTTGCACAAGAGTTCAAACGTAAGC
ATAAAAAGGATTTGACTTCTAACAAGCGTGCACTTCGACGTCTTAGAACAGCTTGTGAGC
GTGCAAAGAGAACTTTGTCAAGCTCGACTCAAGCCAGTATTGAAATTGATTCATTGTTCG
AGGGTATTGATTTCTACACTTCAATTACTCGTATTCCAAAAGTTCAAAAATTACTTCAAG
ACTTCTTTAACGGCAAAGAGTTGAACAAATCAATTAATCCCGATGAGGCCGTCGCTTATG
GTGCTGCTGTTCAAGCTGCCATTTTGCACGGAGACAAGAGCGAAGAAGTTCAAGACTTGC
TTCTTTTGGACGTTACTCCATTGTCACTCGGTATTGAAACAGCTGGTGGTGTCATGAGCG
TTTTGATTAAACGTAATACAACAATTCCAACCAAGCAAACTCAAACTTTCACCACCTATT
CAGATAATCAACCAGGAGTATTGATTCAAGTATTTGAAGGCGAACGTGCTATGACCAAGG
ATAACAATCTTCTCGGTAAATTCGAACTTGCCGGTATTCCTCCTGCTCCACGCGGTGTCC
CACAAATTGAAGTTACATTTGATATCGATGCAAACGGTATTTTGAATGTTACTGCTTTGG
AAAAATCAACAAATAAGGAAAACAAGATCACAATTACAAACGACAAGGGACGTTTGAGCA
AAGAAGATATCGAACGTATGGTTAATGAAGCTGAGAAATACCGTTCAGAGGATGATGCAC
AAAAAGATCGCATTGCAGCCAAGAACGGTTTGGAATCATACTGCTTCAACATGAAGGCTA
CAATGGAAGATGATAAATTGAAGGATAAGATCTCTGAAAGTGACAAGAAGACCATTTTGG
ACAAATGCAATGATACTATTAAATGGCTCGATGCAAATCAATTGGGTGAAAAGGAAGAAT
ATGAACACCGTCAAAAAGAATTAGAAGGAATTTGCAATCCAATTATCACTAAATTATATC
AATCTGCTGGTGGTGCTCCTGGTGGTATGCCTGGCTTCCCTGGAGCTGGTGCAGCTGGCG
GTGGCGGCGCAGCAGGAGCTGGTGCAGGATCAGGTCCAACAATTGAAGAAGTCGACTAA

>g11137.t15 Gene=g11137 Length=547
MNPTNTIFDAKRLIGRKFDDPAVQSDMKHWPFEVVSVEGKPKIKVTYKDEVKTFFPEEIS
SMVLVKMKETAEAYLGKTVTNAVITVPAYFNDSQRQATKDSGTISGLNVLRIINEPTAAA
IAYGLDKKAAGERNVLIFDLGGGTFDVSILSIDDGIFEVKSTAGDTHLGGEDFDNRLVNH
FAQEFKRKHKKDLTSNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRI
PKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGI
ETAGGVMSVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVFEGERAMTKDNNLLGKFELAG
IPPAPRGVPQIEVTFDIDANGILNVTALEKSTNKENKITITNDKGRLSKEDIERMVNEAE
KYRSEDDAQKDRIAAKNGLESYCFNMKATMEDDKLKDKISESDKKTILDKCNDTIKWLDA
NQLGEKEEYEHRQKELEGICNPIITKLYQSAGGAPGGMPGFPGAGAAGGGGAAGAGAGSG
PTIEEVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
17 g11137.t15 Gene3D G3DSA:3.30.420.40 - 1 163 1.9E-64
16 g11137.t15 Gene3D G3DSA:3.90.640.10 Actin; Chain A 169 253 7.9E-35
15 g11137.t15 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 277 406 3.8E-66
18 g11137.t15 Gene3D G3DSA:1.20.1270.10 - 407 510 2.0E-39
14 g11137.t15 MobiDBLite mobidb-lite consensus disorder prediction 527 547 -
3 g11137.t15 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 1 239 0.0
5 g11137.t15 PANTHER PTHR19375:SF382 HEAT SHOCK-RELATED 70 KDA PROTEIN 2 1 239 0.0
2 g11137.t15 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 238 515 0.0
4 g11137.t15 PANTHER PTHR19375:SF382 HEAT SHOCK-RELATED 70 KDA PROTEIN 2 238 515 0.0
8 g11137.t15 PRINTS PR00301 70kDa heat shock protein signature 82 102 5.2E-26
6 g11137.t15 PRINTS PR00301 70kDa heat shock protein signature 143 153 5.2E-26
7 g11137.t15 PRINTS PR00301 70kDa heat shock protein signature 368 384 5.2E-26
1 g11137.t15 Pfam PF00012 Hsp70 protein 1 239 1.3E-109
13 g11137.t15 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 137 150 -
11 g11137.t15 SUPERFAMILY SSF53067 Actin-like ATPase domain 1 127 1.55E-44
12 g11137.t15 SUPERFAMILY SSF53067 Actin-like ATPase domain 131 279 2.4E-48
10 g11137.t15 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 283 440 2.62E-64
9 g11137.t15 SUPERFAMILY SSF100934 Heat shock protein 70kD (HSP70), C-terminal subdomain 435 516 2.35E-32

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values