General information for g11137.t16
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Heat shock 70 kDa protein cognate 4.
Parent gene
- The parent gene g11137 is located on chr_1: 14304417..14305628 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11137 | g11137.t16 | TTS | g11137.t16 | 14302528 | 14302528 |
| chr_1 | g11137 | g11137.t16 | isoform | g11137.t16 | 14302645 | 14305628 |
| chr_1 | g11137 | g11137.t16 | exon | g11137.t16.exon1 | 14302645 | 14303381 |
| chr_1 | g11137 | g11137.t16 | cds | g11137.t16.CDS1 | 14302645 | 14303370 |
| chr_1 | g11137 | g11137.t16 | exon | g11137.t16.exon2 | 14303913 | 14303979 |
| chr_1 | g11137 | g11137.t16 | exon | g11137.t16.exon3 | 14305504 | 14305628 |
| chr_1 | g11137 | g11137.t16 | TSS | g11137.t16 | 14305607 | 14305607 |
Sequences
>g11137.t16 Gene=g11137 Length=929
CCGAAAGTTGCCGAAGATTTCAGTTTGAGTCAAAAATTCAAGTCGATAAGTTGCATTCTA
ATTAAGAGCAGATCTCAAGTCCTTAAAACTATATTTTATAAGTGATTATAAACTTACATT
TTGATGTTTCAATTCTTTCAATTGATGATGGAATTTTTGAAGTAAAGTCGACAGCCGGTG
ACACTCATCTTGCTGGTGGTGTCATGAGCGTTTTGATTAAACGTAATACAACAATTCCAA
CCAAGCAAACTCAAACTTTCACCACCTATTCAGATAATCAACCAGGAGTATTGATTCAAG
TATTTGAAGGCGAACGTGCTATGACCAAGGATAACAATCTTCTCGGTAAATTCGAACTTG
CCGGTATTCCTCCTGCTCCACGCGGTGTCCCACAAATTGAAGTTACATTTGATATCGATG
CAAACGGTATTTTGAATGTTACTGCTTTGGAAAAATCAACAAATAAGGAAAACAAGATCA
CAATTACAAACGACAAGGGACGTTTGAGCAAAGAAGATATCGAACGTATGGTTAATGAAG
CTGAGAAATACCGTTCAGAGGATGATGCACAAAAAGATCGCATTGCAGCCAAGAACGGTT
TGGAATCATACTGCTTCAACATGAAGGCTACAATGGAAGATGATAAATTGAAGGATAAGA
TCTCTGAAAGTGACAAGAAGACCATTTTGGACAAATGCAATGATACTATTAAATGGCTCG
ATGCAAATCAATTGGGTGAAAAGGAAGAATATGAACACCGTCAAAAAGAATTAGAAGGAA
TTTGCAATCCAATTATCACTAAATTATATCAATCTGCTGGTGGTGCTCCTGGTGGTATGC
CTGGCTTCCCTGGAGCTGGTGCAGCTGGCGGTGGCGGCGCAGCAGGAGCTGGTGCAGGAT
CAGGTCCAACAATTGAAGAAGTCGACTAA
>g11137.t16 Gene=g11137 Length=241
MSVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVFEGERAMTKDNNLLGKFELAGIPPAPR
GVPQIEVTFDIDANGILNVTALEKSTNKENKITITNDKGRLSKEDIERMVNEAEKYRSED
DAQKDRIAAKNGLESYCFNMKATMEDDKLKDKISESDKKTILDKCNDTIKWLDANQLGEK
EEYEHRQKELEGICNPIITKLYQSAGGAPGGMPGFPGAGAAGGGGAAGAGAGSGPTIEEV
D
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g11137.t16 | Gene3D | G3DSA:2.60.34.10 | Substrate Binding Domain Of DNAk; Chain A | 1 | 100 | 2.5E-51 |
| 8 | g11137.t16 | Gene3D | G3DSA:1.20.1270.10 | - | 101 | 204 | 4.1E-40 |
| 6 | g11137.t16 | MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 241 | - |
| 2 | g11137.t16 | PANTHER | PTHR19375:SF458 | SI:CH211-199O1.2 | 1 | 213 | 3.6E-115 |
| 3 | g11137.t16 | PANTHER | PTHR19375 | HEAT SHOCK PROTEIN 70KDA | 1 | 213 | 3.6E-115 |
| 1 | g11137.t16 | Pfam | PF00012 | Hsp70 protein | 2 | 203 | 8.0E-60 |
| 5 | g11137.t16 | SUPERFAMILY | SSF100920 | Heat shock protein 70kD (HSP70), peptide-binding domain | 1 | 134 | 6.93E-53 |
| 4 | g11137.t16 | SUPERFAMILY | SSF100934 | Heat shock protein 70kD (HSP70), C-terminal subdomain | 129 | 210 | 5.49E-33 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
