Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein cognate 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11137 g11137.t17 TTS g11137.t17 14302528 14302528
chr_1 g11137 g11137.t17 isoform g11137.t17 14302645 14305628
chr_1 g11137 g11137.t17 exon g11137.t17.exon1 14302645 14303156
chr_1 g11137 g11137.t17 cds g11137.t17.CDS1 14302645 14303156
chr_1 g11137 g11137.t17 exon g11137.t17.exon2 14303229 14304392
chr_1 g11137 g11137.t17 cds g11137.t17.CDS2 14303229 14304392
chr_1 g11137 g11137.t17 exon g11137.t17.exon3 14304518 14304725
chr_1 g11137 g11137.t17 cds g11137.t17.CDS3 14304518 14304725
chr_1 g11137 g11137.t17 exon g11137.t17.exon4 14305475 14305628
chr_1 g11137 g11137.t17 TSS g11137.t17 14305607 14305607

Sequences

>g11137.t17 Gene=g11137 Length=2038
CCGAAAGTTGCCGAAGATTTCAGTTTGAGTCAAAAATTCAAGTCGATAAGTTGCATTCTA
ATTAAGAGCAGATCTCAAGTCCTTAAAACTATATTTTATAAGTGATTATAAACTTACATT
TTGATAAATTAACTAATTAAAACTACAAATAAAGATGGCCGCAAAAGCTCCAGCAGTTGG
TATTGATTTGGGTACAACTTACTCGTGTGTCGGAGTTTTCCAACACGGTAAAGTTGAAAT
TATTGCCAACGATCAAGGAAACCGTACGACTCCATCGTATGTCGCATTTACTGATACTGA
AAGATTAATTGGTGATGCTGCCAAGAATCAAGTTGCAATGAATCCAACAAACACCATTTT
TGATGCTAAACGTTTGATTGGTCGCAAATTCGATGACCCAGCAGTTCAATCAGACATGAA
GCACTGGCCATTCGAAGTTGTCAGTGTTGAGGGAAAGCCTAAAATCAAGGTTACTTATAA
GGATGAAGTAAAGACTTTCTTCCCTGAAGAAATTAGTTCAATGGTTTTGGTTAAAATGAA
GGAAACTGCTGAGGCCTATTTGGGCAAGACTGTAACAAATGCAGTCATTACTGTTCCAGC
TTACTTCAATGACTCGCAACGTCAAGCAACAAAGGATTCTGGTACCATCTCAGGATTAAA
TGTTTTGCGTATTATTAACGAACCAACAGCTGCTGCTATTGCCTATGGTCTCGATAAGAA
GGCTGCAGGTGAACGCAATGTTTTGATTTTCGATTTGGGCGGTGGTACATTTGATGTTTC
AATTCTTTCAATTGATGATGGAATTTTTGAAGTAAAGTCGACAGCCGGTGACACTCATCT
TGGTGGTGAAGATTTTGATAATCGCCTCGTTAATCATTTTGCACAAGAGTTCAAACGTAA
GCATAAAAAGGATTTGACTTCTAACAAGCGTGCACTTCGACGTCTTAGAACAGCTTGTGA
GCGTGCAAAGAGAACTTTGTCAAGCTCGACTCAAGCCAGTATTGAAATTGATTCATTGTT
CGAGGGTATTGATTTCTACACTTCAATTACTCGTGCACGTTTCGAAGAGTTGAATGCTGA
TCTCTTCCGTTCAACAATGGAGCCAGTTGAAAAAGCTATCCGTGATGCTAAAATGGACAA
AGGAACAATTCATGATATCGTTCTTGTCGGTGGCTCAACTCGTATTCCAAAAGTTCAAAA
ATTACTTCAAGACTTCTTTAACGGCAAAGAGTTGAACAAATCAATTAATCCCGATGAGGC
CGTCGCTTATGGTGCTGCTGTTCAAGCTGCCATTTTGCACGGAGACAAGAGCGAAGAAGT
TCAAGACTTGCTTCTTTTGGACGTTACTCCATTGTCACTCGGTATTGAAACAGCTGGTGG
TGTCATGAGCGTTTTGATTAAACGTAATACAACAATTCCAACCAAGCAAACTCAAACTTT
CACCACCTATTCAGATAATCAACCAGGAGTATTGATTCAAGTATTTGAAGGCGAACGTGC
TATGACCAAGGATAACAATCTTCTCGATGCAAACGGTATTTTGAATGTTACTGCTTTGGA
AAAATCAACAAATAAGGAAAACAAGATCACAATTACAAACGACAAGGGACGTTTGAGCAA
AGAAGATATCGAACGTATGGTTAATGAAGCTGAGAAATACCGTTCAGAGGATGATGCACA
AAAAGATCGCATTGCAGCCAAGAACGGTTTGGAATCATACTGCTTCAACATGAAGGCTAC
AATGGAAGATGATAAATTGAAGGATAAGATCTCTGAAAGTGACAAGAAGACCATTTTGGA
CAAATGCAATGATACTATTAAATGGCTCGATGCAAATCAATTGGGTGAAAAGGAAGAATA
TGAACACCGTCAAAAAGAATTAGAAGGAATTTGCAATCCAATTATCACTAAATTATATCA
ATCTGCTGGTGGTGCTCCTGGTGGTATGCCTGGCTTCCCTGGAGCTGGTGCAGCTGGCGG
TGGCGGCGCAGCAGGAGCTGGTGCAGGATCAGGTCCAACAATTGAAGAAGTCGACTAA

>g11137.t17 Gene=g11137 Length=627
MAAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV
AMNPTNTIFDAKRLIGRKFDDPAVQSDMKHWPFEVVSVEGKPKIKVTYKDEVKTFFPEEI
SSMVLVKMKETAEAYLGKTVTNAVITVPAYFNDSQRQATKDSGTISGLNVLRIINEPTAA
AIAYGLDKKAAGERNVLIFDLGGGTFDVSILSIDDGIFEVKSTAGDTHLGGEDFDNRLVN
HFAQEFKRKHKKDLTSNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITR
ARFEELNADLFRSTMEPVEKAIRDAKMDKGTIHDIVLVGGSTRIPKVQKLLQDFFNGKEL
NKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMSVLIKRNTT
IPTKQTQTFTTYSDNQPGVLIQVFEGERAMTKDNNLLDANGILNVTALEKSTNKENKITI
TNDKGRLSKEDIERMVNEAEKYRSEDDAQKDRIAAKNGLESYCFNMKATMEDDKLKDKIS
ESDKKTILDKCNDTIKWLDANQLGEKEEYEHRQKELEGICNPIITKLYQSAGGAPGGMPG
FPGAGAAGGGGAAGAGAGSGPTIEEVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
26 g11137.t17 CDD cd10233 HSPA1-2_6-8-like_NBD 7 382 0.0
22 g11137.t17 Gene3D G3DSA:3.30.420.40 - 8 377 8.5E-182
24 g11137.t17 Gene3D G3DSA:3.30.30.30 - 69 115 8.5E-182
23 g11137.t17 Gene3D G3DSA:3.30.420.40 - 189 366 8.5E-182
21 g11137.t17 Gene3D G3DSA:3.90.640.10 Actin; Chain A 230 307 8.5E-182
19 g11137.t17 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 378 457 3.4E-36
20 g11137.t17 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 458 486 7.3E-7
25 g11137.t17 Gene3D G3DSA:1.20.1270.10 - 487 590 2.5E-39
30 g11137.t17 MobiDBLite mobidb-lite consensus disorder prediction 607 627 -
3 g11137.t17 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 1 457 0.0
5 g11137.t17 PANTHER PTHR19375:SF382 HEAT SHOCK-RELATED 70 KDA PROTEIN 2 1 457 0.0
2 g11137.t17 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 457 595 0.0
4 g11137.t17 PANTHER PTHR19375:SF382 HEAT SHOCK-RELATED 70 KDA PROTEIN 2 457 595 0.0
9 g11137.t17 PRINTS PR00301 70kDa heat shock protein signature 6 19 5.9E-79
10 g11137.t17 PRINTS PR00301 70kDa heat shock protein signature 34 46 5.9E-79
14 g11137.t17 PRINTS PR00301 70kDa heat shock protein signature 56 64 5.9E-79
13 g11137.t17 PRINTS PR00301 70kDa heat shock protein signature 143 163 5.9E-79
7 g11137.t17 PRINTS PR00301 70kDa heat shock protein signature 204 214 5.9E-79
6 g11137.t17 PRINTS PR00301 70kDa heat shock protein signature 332 348 5.9E-79
8 g11137.t17 PRINTS PR00301 70kDa heat shock protein signature 364 384 5.9E-79
12 g11137.t17 PRINTS PR00301 70kDa heat shock protein signature 391 410 5.9E-79
11 g11137.t17 PRINTS PR00301 70kDa heat shock protein signature 448 464 5.9E-79
1 g11137.t17 Pfam PF00012 Hsp70 protein 7 457 2.0E-213
27 g11137.t17 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 10 17 -
29 g11137.t17 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 198 211 -
28 g11137.t17 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 335 349 -
18 g11137.t17 SUPERFAMILY SSF53067 Actin-like ATPase domain 7 188 4.32E-72
17 g11137.t17 SUPERFAMILY SSF53067 Actin-like ATPase domain 192 383 2.93E-70
16 g11137.t17 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 387 520 8.11E-47
15 g11137.t17 SUPERFAMILY SSF100934 Heat shock protein 70kD (HSP70), C-terminal subdomain 515 596 2.88E-32

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values