Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein cognate 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11137 g11137.t19 TTS g11137.t19 14302528 14302528
chr_1 g11137 g11137.t19 isoform g11137.t19 14302645 14305628
chr_1 g11137 g11137.t19 exon g11137.t19.exon1 14302645 14304392
chr_1 g11137 g11137.t19 cds g11137.t19.CDS1 14302645 14304392
chr_1 g11137 g11137.t19 exon g11137.t19.exon2 14304518 14304703
chr_1 g11137 g11137.t19 cds g11137.t19.CDS2 14304518 14304542
chr_1 g11137 g11137.t19 exon g11137.t19.exon3 14305475 14305628
chr_1 g11137 g11137.t19 TSS g11137.t19 14305607 14305607

Sequences

>g11137.t19 Gene=g11137 Length=2088
CCGAAAGTTGCCGAAGATTTCAGTTTGAGTCAAAAATTCAAGTCGATAAGTTGCATTCTA
ATTAAGAGCAGATCTCAAGTCCTTAAAACTATATTTTATAAGTGATTATAAACTTACATT
TTGATAAATTAACTAATTAAAACTACAAATAAAGTTGGTATTGATTTGGGTACAACTTAC
TCGTGTGTCGGAGTTTTCCAACACGGTAAAGTTGAAATTATTGCCAACGATCAAGGAAAC
CGTACGACTCCATCGTATGTCGCATTTACTGATACTGAAAGATTAATTGGTGATGCTGCC
AAGAATCAAGTTGCAATGAATCCAACAAACACCATTTTTGATGCTAAACGTTTGATTGGT
CGCAAATTCGATGACCCAGCAGTTCAATCAGACATGAAGCACTGGCCATTCGAAGTTGTC
AGTGTTGAGGGAAAGCCTAAAATCAAGGTTACTTATAAGGATGAAGTAAAGACTTTCTTC
CCTGAAGAAATTAGTTCAATGGTTTTGGTTAAAATGAAGGAAACTGCTGAGGCCTATTTG
GGCAAGACTGTAACAAATGCAGTCATTACTGTTCCAGCTTACTTCAATGACTCGCAACGT
CAAGCAACAAAGGATTCTGGTACCATCTCAGGATTAAATGTTTTGCGTATTATTAACGAA
CCAACAGCTGCTGCTATTGCCTATGGTCTCGATAAGAAGGCTGCAGGTGAACGCAATGTT
TTGATTTTCGATTTGGGCGGTGGTACATTTGATGTTTCAATTCTTTCAATTGATGATGGA
ATTTTTGAAGTAAAGTCGACAGCCGGTGACACTCATCTTGGTGGTGAAGATTTTGATAAT
CGCCTCGTTAATCATTTTGCACAAGAGTTCAAACGTAAGCATAAAAAGGATTTGACTTCT
AACAAGCGTGCACTTCGACGTCTTAGAACAGCTTGTGAGCGTGCAAAGAGAACTTTGTCA
AGCTCGACTCAAGCCAGTATTGAAATTGATTCATTGTTCGAGGGTATTGATTTCTACACT
TCAATTACTCGTGCACGTTTCGAAGAGTTGAATGCTGATCTCTTCCGTTCAACAATGGAG
CCAGTTGAAAAAGCTATCCGTGATGCTAAAATGGACAAAGGAACAATTCATGATATCGTT
CTTGTCGGTGGCTCAACTCGTATTCCAAAAGTTCAAAAATTACTTCAAGACTTCTTTAAC
GGCAAAGAGTTGAACAAATCAATTAATCCCGATGAGGCCGTCGCTTATGGTGCTGCTGTT
CAAGCTGCCATTTTGCACGGAGACAAGAGCGAAGAAGTTCAAGACTTGCTTCTTTTGGAC
GTTACTCCATTGTCACTCGGTATTGAAACAGCTGGTGGTGTCATGAGCGTTTTGATTAAA
CGTAATACAACAATTCCAACCAAGCAAACTCAAACTTTCACCACCTATTCAGATAATCAA
CCAGGAGTATTGATTCAAGTATTTGAAGGCGAACGTGCTATGACCAAGGATAACAATCTT
CTCGGTAAATTCGAACTTGCCGGTATTCCTCCTGCTCCACGCGGTGTCCCACAAATTGAA
GTTACATTTGATATCGATGCAAACGGTATTTTGAATGTTACTGCTTTGGAAAAATCAACA
AATAAGGAAAACAAGATCACAATTACAAACGACAAGGGACGTTTGAGCAAAGAAGATATC
GAACGTATGGTTAATGAAGCTGAGAAATACCGTTCAGAGGATGATGCACAAAAAGATCGC
ATTGCAGCCAAGAACGGTTTGGAATCATACTGCTTCAACATGAAGGCTACAATGGAAGAT
GATAAATTGAAGGATAAGATCTCTGAAAGTGACAAGAAGACCATTTTGGACAAATGCAAT
GATACTATTAAATGGCTCGATGCAAATCAATTGGGTGAAAAGGAAGAATATGAACACCGT
CAAAAAGAATTAGAAGGAATTTGCAATCCAATTATCACTAAATTATATCAATCTGCTGGT
GGTGCTCCTGGTGGTATGCCTGGCTTCCCTGGAGCTGGTGCAGCTGGCGGTGGCGGCGCA
GCAGGAGCTGGTGCAGGATCAGGTCCAACAATTGAAGAAGTCGACTAA

>g11137.t19 Gene=g11137 Length=590
MNPTNTIFDAKRLIGRKFDDPAVQSDMKHWPFEVVSVEGKPKIKVTYKDEVKTFFPEEIS
SMVLVKMKETAEAYLGKTVTNAVITVPAYFNDSQRQATKDSGTISGLNVLRIINEPTAAA
IAYGLDKKAAGERNVLIFDLGGGTFDVSILSIDDGIFEVKSTAGDTHLGGEDFDNRLVNH
FAQEFKRKHKKDLTSNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRA
RFEELNADLFRSTMEPVEKAIRDAKMDKGTIHDIVLVGGSTRIPKVQKLLQDFFNGKELN
KSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMSVLIKRNTTI
PTKQTQTFTTYSDNQPGVLIQVFEGERAMTKDNNLLGKFELAGIPPAPRGVPQIEVTFDI
DANGILNVTALEKSTNKENKITITNDKGRLSKEDIERMVNEAEKYRSEDDAQKDRIAAKN
GLESYCFNMKATMEDDKLKDKISESDKKTILDKCNDTIKWLDANQLGEKEEYEHRQKELE
GICNPIITKLYQSAGGAPGGMPGFPGAGAAGGGGAAGAGAGSGPTIEEVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
19 g11137.t19 Gene3D G3DSA:3.30.420.40 - 2 318 5.5E-152
21 g11137.t19 Gene3D G3DSA:3.30.30.30 - 8 54 5.5E-152
20 g11137.t19 Gene3D G3DSA:3.30.420.40 - 128 305 5.5E-152
18 g11137.t19 Gene3D G3DSA:3.90.640.10 Actin; Chain A 169 246 5.5E-152
17 g11137.t19 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 320 449 4.3E-66
22 g11137.t19 Gene3D G3DSA:1.20.1270.10 - 450 553 2.3E-39
16 g11137.t19 MobiDBLite mobidb-lite consensus disorder prediction 570 590 -
2 g11137.t19 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 1 558 0.0
3 g11137.t19 PANTHER PTHR19375:SF382 HEAT SHOCK-RELATED 70 KDA PROTEIN 2 1 558 0.0
6 g11137.t19 PRINTS PR00301 70kDa heat shock protein signature 82 102 3.5E-66
4 g11137.t19 PRINTS PR00301 70kDa heat shock protein signature 143 153 3.5E-66
8 g11137.t19 PRINTS PR00301 70kDa heat shock protein signature 271 287 3.5E-66
7 g11137.t19 PRINTS PR00301 70kDa heat shock protein signature 303 323 3.5E-66
5 g11137.t19 PRINTS PR00301 70kDa heat shock protein signature 330 349 3.5E-66
9 g11137.t19 PRINTS PR00301 70kDa heat shock protein signature 411 427 3.5E-66
1 g11137.t19 Pfam PF00012 Hsp70 protein 1 552 5.7E-230
15 g11137.t19 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 137 150 -
14 g11137.t19 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 274 288 -
13 g11137.t19 SUPERFAMILY SSF53067 Actin-like ATPase domain 1 127 1.75E-44
12 g11137.t19 SUPERFAMILY SSF53067 Actin-like ATPase domain 131 322 2.84E-70
11 g11137.t19 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 326 483 3.14E-64
10 g11137.t19 SUPERFAMILY SSF100934 Heat shock protein 70kD (HSP70), C-terminal subdomain 478 559 2.62E-32

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values