Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein cognate 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11137 g11137.t21 TTS g11137.t21 14302528 14302528
chr_1 g11137 g11137.t21 isoform g11137.t21 14302645 14305628
chr_1 g11137 g11137.t21 exon g11137.t21.exon1 14302645 14303300
chr_1 g11137 g11137.t21 cds g11137.t21.CDS1 14302645 14303300
chr_1 g11137 g11137.t21 exon g11137.t21.exon2 14303913 14304392
chr_1 g11137 g11137.t21 cds g11137.t21.CDS2 14303913 14304392
chr_1 g11137 g11137.t21 exon g11137.t21.exon3 14304518 14304725
chr_1 g11137 g11137.t21 cds g11137.t21.CDS3 14304518 14304725
chr_1 g11137 g11137.t21 exon g11137.t21.exon4 14305475 14305628
chr_1 g11137 g11137.t21 TSS g11137.t21 14305607 14305607

Sequences

>g11137.t21 Gene=g11137 Length=1498
CCGAAAGTTGCCGAAGATTTCAGTTTGAGTCAAAAATTCAAGTCGATAAGTTGCATTCTA
ATTAAGAGCAGATCTCAAGTCCTTAAAACTATATTTTATAAGTGATTATAAACTTACATT
TTGATAAATTAACTAATTAAAACTACAAATAAAGATGGCCGCAAAAGCTCCAGCAGTTGG
TATTGATTTGGGTACAACTTACTCGTGTGTCGGAGTTTTCCAACACGGTAAAGTTGAAAT
TATTGCCAACGATCAAGGAAACCGTACGACTCCATCGTATGTCGCATTTACTGATACTGA
AAGATTAATTGGTGATGCTGCCAAGAATCAAGTTGCAATGAATCCAACAAACACCATTTT
TGATGCTAAACGTTTGATTGGTCGCAAATTCGATGACCCAGCAGTTCAATCAGACATGAA
GCACTGGCCATTCGAAGTTGTCAGTGTTGAGGGAAAGCCTAAAATCAAGGTTACTTATAA
GGATGAAGTAAAGACTTTCTTCCCTGAAGAAATTAGTTCAATGGTTTTGGTTAAAATGAA
GGAAACTGCTGAGGCCTATTTGGGCAAGACTGTAACAAATGCAGTCATTACTGTTCCAGC
TTACTTCAATGACTCGCAACGTCAAGCAACAAAGGATTCTGGTACCATCTCAGGATTAAA
TGTTTTGCGTATTATTAACGAACCAACAGCTGCTGCTATTGCCTATGGTCTCGATAAGAA
GGCTGCAGGTGAACGCAATGTTTTGATTTTCGATTTGGGCGGTGGTACATTTGATGTTTC
AATTCTTTCAATTGATGATGGAATTTTTGAAGTAAAGTCGACAGCCGGTGACACTCATCT
TGATAATCAACCAGGAGTATTGATTCAAGTATTTGAAGGCGAACGTGCTATGACCAAGGA
TAACAATCTTCTCGGTAAATTCGAACTTGCCGGTATTCCTCCTGCTCCACGCGGTGTCCC
ACAAATTGAAGTTACATTTGATATCGATGCAAACGGTATTTTGAATGTTACTGCTTTGGA
AAAATCAACAAATAAGGAAAACAAGATCACAATTACAAACGACAAGGGACGTTTGAGCAA
AGAAGATATCGAACGTATGGTTAATGAAGCTGAGAAATACCGTTCAGAGGATGATGCACA
AAAAGATCGCATTGCAGCCAAGAACGGTTTGGAATCATACTGCTTCAACATGAAGGCTAC
AATGGAAGATGATAAATTGAAGGATAAGATCTCTGAAAGTGACAAGAAGACCATTTTGGA
CAAATGCAATGATACTATTAAATGGCTCGATGCAAATCAATTGGGTGAAAAGGAAGAATA
TGAACACCGTCAAAAAGAATTAGAAGGAATTTGCAATCCAATTATCACTAAATTATATCA
ATCTGCTGGTGGTGCTCCTGGTGGTATGCCTGGCTTCCCTGGAGCTGGTGCAGCTGGCGG
TGGCGGCGCAGCAGGAGCTGGTGCAGGATCAGGTCCAACAATTGAAGAAGTCGACTAA

>g11137.t21 Gene=g11137 Length=447
MAAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV
AMNPTNTIFDAKRLIGRKFDDPAVQSDMKHWPFEVVSVEGKPKIKVTYKDEVKTFFPEEI
SSMVLVKMKETAEAYLGKTVTNAVITVPAYFNDSQRQATKDSGTISGLNVLRIINEPTAA
AIAYGLDKKAAGERNVLIFDLGGGTFDVSILSIDDGIFEVKSTAGDTHLDNQPGVLIQVF
EGERAMTKDNNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVTALEKSTNKENKITI
TNDKGRLSKEDIERMVNEAEKYRSEDDAQKDRIAAKNGLESYCFNMKATMEDDKLKDKIS
ESDKKTILDKCNDTIKWLDANQLGEKEEYEHRQKELEGICNPIITKLYQSAGGAPGGMPG
FPGAGAAGGGGAAGAGAGSGPTIEEVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
19 g11137.t21 Gene3D G3DSA:3.30.420.40 - 1 219 3.4E-101
18 g11137.t21 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 220 305 6.4E-36
20 g11137.t21 Gene3D G3DSA:1.20.1270.10 - 307 410 1.4E-39
17 g11137.t21 MobiDBLite mobidb-lite consensus disorder prediction 427 447 -
3 g11137.t21 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 1 229 3.2E-239
5 g11137.t21 PANTHER PTHR19375:SF382 HEAT SHOCK-RELATED 70 KDA PROTEIN 2 1 229 3.2E-239
2 g11137.t21 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 230 415 3.2E-239
4 g11137.t21 PANTHER PTHR19375:SF382 HEAT SHOCK-RELATED 70 KDA PROTEIN 2 230 415 3.2E-239
7 g11137.t21 PRINTS PR00301 70kDa heat shock protein signature 6 19 5.8E-38
8 g11137.t21 PRINTS PR00301 70kDa heat shock protein signature 34 46 5.8E-38
9 g11137.t21 PRINTS PR00301 70kDa heat shock protein signature 56 64 5.8E-38
10 g11137.t21 PRINTS PR00301 70kDa heat shock protein signature 143 163 5.8E-38
6 g11137.t21 PRINTS PR00301 70kDa heat shock protein signature 204 214 5.8E-38
1 g11137.t21 Pfam PF00012 Hsp70 protein 7 229 4.6E-112
15 g11137.t21 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 10 17 -
16 g11137.t21 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 198 211 -
13 g11137.t21 SUPERFAMILY SSF53067 Actin-like ATPase domain 7 188 1.79E-72
14 g11137.t21 SUPERFAMILY SSF53067 Actin-like ATPase domain 192 229 1.3E-9
12 g11137.t21 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 227 340 1.83E-41
11 g11137.t21 SUPERFAMILY SSF100934 Heat shock protein 70kD (HSP70), C-terminal subdomain 335 416 1.7E-32

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values