Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein cognate 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11137 g11137.t22 TTS g11137.t22 14302528 14302528
chr_1 g11137 g11137.t22 isoform g11137.t22 14302645 14305628
chr_1 g11137 g11137.t22 exon g11137.t22.exon1 14302645 14303561
chr_1 g11137 g11137.t22 cds g11137.t22.CDS1 14302645 14303561
chr_1 g11137 g11137.t22 exon g11137.t22.exon2 14303928 14304392
chr_1 g11137 g11137.t22 cds g11137.t22.CDS2 14303928 14304392
chr_1 g11137 g11137.t22 exon g11137.t22.exon3 14304518 14304725
chr_1 g11137 g11137.t22 cds g11137.t22.CDS3 14304518 14304725
chr_1 g11137 g11137.t22 exon g11137.t22.exon4 14305475 14305628
chr_1 g11137 g11137.t22 TSS g11137.t22 14305607 14305607

Sequences

>g11137.t22 Gene=g11137 Length=1744
CCGAAAGTTGCCGAAGATTTCAGTTTGAGTCAAAAATTCAAGTCGATAAGTTGCATTCTA
ATTAAGAGCAGATCTCAAGTCCTTAAAACTATATTTTATAAGTGATTATAAACTTACATT
TTGATAAATTAACTAATTAAAACTACAAATAAAGATGGCCGCAAAAGCTCCAGCAGTTGG
TATTGATTTGGGTACAACTTACTCGTGTGTCGGAGTTTTCCAACACGGTAAAGTTGAAAT
TATTGCCAACGATCAAGGAAACCGTACGACTCCATCGTATGTCGCATTTACTGATACTGA
AAGATTAATTGGTGATGCTGCCAAGAATCAAGTTGCAATGAATCCAACAAACACCATTTT
TGATGCTAAACGTTTGATTGGTCGCAAATTCGATGACCCAGCAGTTCAATCAGACATGAA
GCACTGGCCATTCGAAGTTGTCAGTGTTGAGGGAAAGCCTAAAATCAAGGTTACTTATAA
GGATGAAGTAAAGACTTTCTTCCCTGAAGAAATTAGTTCAATGGTTTTGGTTAAAATGAA
GGAAACTGCTGAGGCCTATTTGGGCAAGACTGTAACAAATGCAGTCATTACTGTTCCAGC
TTACTTCAATGACTCGCAACGTCAAGCAACAAAGGATTCTGGTACCATCTCAGGATTAAA
TGTTTTGCGTATTATTAACGAACCAACAGCTGCTGCTATTGCCTATGGTCTCGATAAGAA
GGCTGCAGGTGAACGCAATGTTTTGATTTTCGATTTGGGCGGTGGTACATTTGATGTTTC
AATTCTTTCAATTGATGATGGAATTTTTGAAGTAAAGTCGACAGCCGTTCAAAAATTACT
TCAAGACTTCTTTAACGGCAAAGAGTTGAACAAATCAATTAATCCCGATGAGGCCGTCGC
TTATGGTGCTGCTGTTCAAGCTGCCATTTTGCACGGAGACAAGAGCGAAGAAGTTCAAGA
CTTGCTTCTTTTGGACGTTACTCCATTGTCACTCGGTATTGAAACAGCTGGTGGTGTCAT
GAGCGTTTTGATTAAACGTAATACAACAATTCCAACCAAGCAAACTCAAACTTTCACCAC
CTATTCAGATAATCAACCAGGAGTATTGATTCAAGTATTTGAAGGCGAACGTGCTATGAC
CAAGGATAACAATCTTCTCGGTAAATTCGAACTTGCCGGTATTCCTCCTGCTCCACGCGG
TGTCCCACAAATTGAAGTTACATTTGATATCGATGCAAACGGTATTTTGAATGTTACTGC
TTTGGAAAAATCAACAAATAAGGAAAACAAGATCACAATTACAAACGACAAGGGACGTTT
GAGCAAAGAAGATATCGAACGTATGGTTAATGAAGCTGAGAAATACCGTTCAGAGGATGA
TGCACAAAAAGATCGCATTGCAGCCAAGAACGGTTTGGAATCATACTGCTTCAACATGAA
GGCTACAATGGAAGATGATAAATTGAAGGATAAGATCTCTGAAAGTGACAAGAAGACCAT
TTTGGACAAATGCAATGATACTATTAAATGGCTCGATGCAAATCAATTGGGTGAAAAGGA
AGAATATGAACACCGTCAAAAAGAATTAGAAGGAATTTGCAATCCAATTATCACTAAATT
ATATCAATCTGCTGGTGGTGCTCCTGGTGGTATGCCTGGCTTCCCTGGAGCTGGTGCAGC
TGGCGGTGGCGGCGCAGCAGGAGCTGGTGCAGGATCAGGTCCAACAATTGAAGAAGTCGA
CTAA

>g11137.t22 Gene=g11137 Length=529
MAAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV
AMNPTNTIFDAKRLIGRKFDDPAVQSDMKHWPFEVVSVEGKPKIKVTYKDEVKTFFPEEI
SSMVLVKMKETAEAYLGKTVTNAVITVPAYFNDSQRQATKDSGTISGLNVLRIINEPTAA
AIAYGLDKKAAGERNVLIFDLGGGTFDVSILSIDDGIFEVKSTAVQKLLQDFFNGKELNK
SINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMSVLIKRNTTIP
TKQTQTFTTYSDNQPGVLIQVFEGERAMTKDNNLLGKFELAGIPPAPRGVPQIEVTFDID
ANGILNVTALEKSTNKENKITITNDKGRLSKEDIERMVNEAEKYRSEDDAQKDRIAAKNG
LESYCFNMKATMEDDKLKDKISESDKKTILDKCNDTIKWLDANQLGEKEEYEHRQKELEG
ICNPIITKLYQSAGGAPGGMPGFPGAGAAGGGGAAGAGAGSGPTIEEVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
20 g11137.t22 Gene3D G3DSA:3.30.30.30 - 69 119 1.3E-29
19 g11137.t22 Gene3D G3DSA:3.30.420.40 - 196 262 2.0E-13
18 g11137.t22 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 263 388 3.6E-66
21 g11137.t22 Gene3D G3DSA:1.20.1270.10 - 389 492 1.9E-39
17 g11137.t22 MobiDBLite mobidb-lite consensus disorder prediction 509 529 -
3 g11137.t22 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 1 224 1.5E-295
5 g11137.t22 PANTHER PTHR19375:SF382 HEAT SHOCK-RELATED 70 KDA PROTEIN 2 1 224 1.5E-295
2 g11137.t22 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 225 497 1.5E-295
4 g11137.t22 PANTHER PTHR19375:SF382 HEAT SHOCK-RELATED 70 KDA PROTEIN 2 225 497 1.5E-295
7 g11137.t22 PRINTS PR00301 70kDa heat shock protein signature 6 19 1.2E-37
8 g11137.t22 PRINTS PR00301 70kDa heat shock protein signature 34 46 1.2E-37
9 g11137.t22 PRINTS PR00301 70kDa heat shock protein signature 56 64 1.2E-37
10 g11137.t22 PRINTS PR00301 70kDa heat shock protein signature 143 163 1.2E-37
6 g11137.t22 PRINTS PR00301 70kDa heat shock protein signature 204 214 1.2E-37
1 g11137.t22 Pfam PF00012 Hsp70 protein 7 227 2.6E-109
15 g11137.t22 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 10 17 -
16 g11137.t22 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 198 211 -
14 g11137.t22 SUPERFAMILY SSF53067 Actin-like ATPase domain 7 188 2.59E-72
13 g11137.t22 SUPERFAMILY SSF53067 Actin-like ATPase domain 192 259 1.84E-12
12 g11137.t22 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 265 422 2.49E-64
11 g11137.t22 SUPERFAMILY SSF100934 Heat shock protein 70kD (HSP70), C-terminal subdomain 417 498 2.22E-32

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values