Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein cognate 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11137 g11137.t24 TTS g11137.t24 14302528 14302528
chr_1 g11137 g11137.t24 isoform g11137.t24 14302645 14305628
chr_1 g11137 g11137.t24 exon g11137.t24.exon1 14302645 14303844
chr_1 g11137 g11137.t24 cds g11137.t24.CDS1 14302645 14303658
chr_1 g11137 g11137.t24 exon g11137.t24.exon2 14305528 14305628
chr_1 g11137 g11137.t24 TSS g11137.t24 14305607 14305607

Sequences

>g11137.t24 Gene=g11137 Length=1301
CCGAAAGTTGCCGAAGATTTCAGTTTGAGTCAAAAATTCAAGTCGATAAGTTGCATTCTA
ATTAAGAGCAGATCTCAAGTCCTTAAAACTATATTTTATAAGATTTGACTTCTAACAAGC
GTGCACTTCGACGTCTTAGAACAGCTTGTGAGCGTGCAAAGAGAACTTTGTCAAGCTCGA
CTCAAGCCAGTATTGAAATTGATTCATTGTTCGAGGGTATTGATTTCTACACTTCAATTA
CTCGTGCACGTTTCGAAGAGTTGAATGCTGATCTCTTCCGTTCAACAATGGAGCCAGTTG
AAAAAGCTATCCGTGATGCTAAAATGGACAAAGGAACAATTCATGATATCGTTCTTGTCG
GTGGCTCAACTCGTATTCCAAAAGTTCAAAAATTACTTCAAGACTTCTTTAACGGCAAAG
AGTTGAACAAATCAATTAATCCCGATGAGGCCGTCGCTTATGGTGCTGCTGTTCAAGCTG
CCATTTTGCACGGAGACAAGAGCGAAGAAGTTCAAGACTTGCTTCTTTTGGACGTTACTC
CATTGTCACTCGGTATTGAAACAGCTGGTGGTGTCATGAGCGTTTTGATTAAACGTAATA
CAACAATTCCAACCAAGCAAACTCAAACTTTCACCACCTATTCAGATAATCAACCAGGAG
TATTGATTCAAGTATTTGAAGGCGAACGTGCTATGACCAAGGATAACAATCTTCTCGGTA
AATTCGAACTTGCCGGTATTCCTCCTGCTCCACGCGGTGTCCCACAAATTGAAGTTACAT
TTGATATCGATGCAAACGGTATTTTGAATGTTACTGCTTTGGAAAAATCAACAAATAAGG
AAAACAAGATCACAATTACAAACGACAAGGGACGTTTGAGCAAAGAAGATATCGAACGTA
TGGTTAATGAAGCTGAGAAATACCGTTCAGAGGATGATGCACAAAAAGATCGCATTGCAG
CCAAGAACGGTTTGGAATCATACTGCTTCAACATGAAGGCTACAATGGAAGATGATAAAT
TGAAGGATAAGATCTCTGAAAGTGACAAGAAGACCATTTTGGACAAATGCAATGATACTA
TTAAATGGCTCGATGCAAATCAATTGGGTGAAAAGGAAGAATATGAACACCGTCAAAAAG
AATTAGAAGGAATTTGCAATCCAATTATCACTAAATTATATCAATCTGCTGGTGGTGCTC
CTGGTGGTATGCCTGGCTTCCCTGGAGCTGGTGCAGCTGGCGGTGGCGGCGCAGCAGGAG
CTGGTGCAGGATCAGGTCCAACAATTGAAGAAGTCGACTAA

>g11137.t24 Gene=g11137 Length=337
MEPVEKAIRDAKMDKGTIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA
AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMSVLIKRNTTIPTKQTQTFTTYSD
NQPGVLIQVFEGERAMTKDNNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVTALEK
STNKENKITITNDKGRLSKEDIERMVNEAEKYRSEDDAQKDRIAAKNGLESYCFNMKATM
EDDKLKDKISESDKKTILDKCNDTIKWLDANQLGEKEEYEHRQKELEGICNPIITKLYQS
AGGAPGGMPGFPGAGAAGGGGAAGAGAGSGPTIEEVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g11137.t24 Gene3D G3DSA:3.30.420.40 - 1 47 3.7E-19
13 g11137.t24 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 67 196 1.5E-66
15 g11137.t24 Gene3D G3DSA:1.20.1270.10 - 197 300 8.5E-40
12 g11137.t24 MobiDBLite mobidb-lite consensus disorder prediction 317 337 -
2 g11137.t24 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 1 306 1.1E-177
3 g11137.t24 PANTHER PTHR19375:SF382 HEAT SHOCK-RELATED 70 KDA PROTEIN 2 1 306 1.1E-177
4 g11137.t24 PRINTS PR00301 70kDa heat shock protein signature 18 34 1.1E-46
5 g11137.t24 PRINTS PR00301 70kDa heat shock protein signature 50 70 1.1E-46
6 g11137.t24 PRINTS PR00301 70kDa heat shock protein signature 77 96 1.1E-46
7 g11137.t24 PRINTS PR00301 70kDa heat shock protein signature 158 174 1.1E-46
1 g11137.t24 Pfam PF00012 Hsp70 protein 1 299 1.3E-106
11 g11137.t24 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 21 35 -
10 g11137.t24 SUPERFAMILY SSF53067 Actin-like ATPase domain 2 69 4.98E-21
9 g11137.t24 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 73 230 9.42E-65
8 g11137.t24 SUPERFAMILY SSF100934 Heat shock protein 70kD (HSP70), C-terminal subdomain 225 306 1.06E-32

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values