Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein cognate 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11137 g11137.t25 TTS g11137.t25 14302528 14302528
chr_1 g11137 g11137.t25 isoform g11137.t25 14302645 14305628
chr_1 g11137 g11137.t25 exon g11137.t25.exon1 14302645 14304392
chr_1 g11137 g11137.t25 cds g11137.t25.CDS1 14302645 14304392
chr_1 g11137 g11137.t25 exon g11137.t25.exon2 14304518 14304601
chr_1 g11137 g11137.t25 cds g11137.t25.CDS2 14304518 14304601
chr_1 g11137 g11137.t25 exon g11137.t25.exon3 14304674 14304725
chr_1 g11137 g11137.t25 cds g11137.t25.CDS3 14304674 14304725
chr_1 g11137 g11137.t25 exon g11137.t25.exon4 14305475 14305628
chr_1 g11137 g11137.t25 TSS g11137.t25 14305607 14305607

Sequences

>g11137.t25 Gene=g11137 Length=2038
CCGAAAGTTGCCGAAGATTTCAGTTTGAGTCAAAAATTCAAGTCGATAAGTTGCATTCTA
ATTAAGAGCAGATCTCAAGTCCTTAAAACTATATTTTATAAGTGATTATAAACTTACATT
TTGATAAATTAACTAATTAAAACTACAAATAAAGATGGCCGCAAAAGCTCCAGCAGTTGG
TATTGATTTGGGTACAACTTACTCGTATGTCGCATTTACTGATACTGAAAGATTAATTGG
TGATGCTGCCAAGAATCAAGTTGCAATGAATCCAACAAACACCATTTTTGATGCTAAACG
TTTGATTGGTCGCAAATTCGATGACCCAGCAGTTCAATCAGACATGAAGCACTGGCCATT
CGAAGTTGTCAGTGTTGAGGGAAAGCCTAAAATCAAGGTTACTTATAAGGATGAAGTAAA
GACTTTCTTCCCTGAAGAAATTAGTTCAATGGTTTTGGTTAAAATGAAGGAAACTGCTGA
GGCCTATTTGGGCAAGACTGTAACAAATGCAGTCATTACTGTTCCAGCTTACTTCAATGA
CTCGCAACGTCAAGCAACAAAGGATTCTGGTACCATCTCAGGATTAAATGTTTTGCGTAT
TATTAACGAACCAACAGCTGCTGCTATTGCCTATGGTCTCGATAAGAAGGCTGCAGGTGA
ACGCAATGTTTTGATTTTCGATTTGGGCGGTGGTACATTTGATGTTTCAATTCTTTCAAT
TGATGATGGAATTTTTGAAGTAAAGTCGACAGCCGGTGACACTCATCTTGGTGGTGAAGA
TTTTGATAATCGCCTCGTTAATCATTTTGCACAAGAGTTCAAACGTAAGCATAAAAAGGA
TTTGACTTCTAACAAGCGTGCACTTCGACGTCTTAGAACAGCTTGTGAGCGTGCAAAGAG
AACTTTGTCAAGCTCGACTCAAGCCAGTATTGAAATTGATTCATTGTTCGAGGGTATTGA
TTTCTACACTTCAATTACTCGTGCACGTTTCGAAGAGTTGAATGCTGATCTCTTCCGTTC
AACAATGGAGCCAGTTGAAAAAGCTATCCGTGATGCTAAAATGGACAAAGGAACAATTCA
TGATATCGTTCTTGTCGGTGGCTCAACTCGTATTCCAAAAGTTCAAAAATTACTTCAAGA
CTTCTTTAACGGCAAAGAGTTGAACAAATCAATTAATCCCGATGAGGCCGTCGCTTATGG
TGCTGCTGTTCAAGCTGCCATTTTGCACGGAGACAAGAGCGAAGAAGTTCAAGACTTGCT
TCTTTTGGACGTTACTCCATTGTCACTCGGTATTGAAACAGCTGGTGGTGTCATGAGCGT
TTTGATTAAACGTAATACAACAATTCCAACCAAGCAAACTCAAACTTTCACCACCTATTC
AGATAATCAACCAGGAGTATTGATTCAAGTATTTGAAGGCGAACGTGCTATGACCAAGGA
TAACAATCTTCTCGGTAAATTCGAACTTGCCGGTATTCCTCCTGCTCCACGCGGTGTCCC
ACAAATTGAAGTTACATTTGATATCGATGCAAACGGTATTTTGAATGTTACTGCTTTGGA
AAAATCAACAAATAAGGAAAACAAGATCACAATTACAAACGACAAGGGACGTTTGAGCAA
AGAAGATATCGAACGTATGGTTAATGAAGCTGAGAAATACCGTTCAGAGGATGATGCACA
AAAAGATCGCATTGCAGCCAAGAACGGTTTGGAATCATACTGCTTCAACATGAAGGCTAC
AATGGAAGATGATAAATTGAAGGATAAGATCTCTGAAAGTGACAAGAAGACCATTTTGGA
CAAATGCAATGATACTATTAAATGGCTCGATGCAAATCAATTGGGTGAAAAGGAAGAATA
TGAACACCGTCAAAAAGAATTAGAAGGAATTTGCAATCCAATTATCACTAAATTATATCA
ATCTGCTGGTGGTGCTCCTGGTGGTATGCCTGGCTTCCCTGGAGCTGGTGCAGCTGGCGG
TGGCGGCGCAGCAGGAGCTGGTGCAGGATCAGGTCCAACAATTGAAGAAGTCGACTAA

>g11137.t25 Gene=g11137 Length=627
MAAKAPAVGIDLGTTYSYVAFTDTERLIGDAAKNQVAMNPTNTIFDAKRLIGRKFDDPAV
QSDMKHWPFEVVSVEGKPKIKVTYKDEVKTFFPEEISSMVLVKMKETAEAYLGKTVTNAV
ITVPAYFNDSQRQATKDSGTISGLNVLRIINEPTAAAIAYGLDKKAAGERNVLIFDLGGG
TFDVSILSIDDGIFEVKSTAGDTHLGGEDFDNRLVNHFAQEFKRKHKKDLTSNKRALRRL
RTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKAIRD
AKMDKGTIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILHGD
KSEEVQDLLLLDVTPLSLGIETAGGVMSVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVF
EGERAMTKDNNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVTALEKSTNKENKITI
TNDKGRLSKEDIERMVNEAEKYRSEDDAQKDRIAAKNGLESYCFNMKATMEDDKLKDKIS
ESDKKTILDKCNDTIKWLDANQLGEKEEYEHRQKELEGICNPIITKLYQSAGGAPGGMPG
FPGAGAAGGGGAAGAGAGSGPTIEEVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
22 g11137.t25 CDD cd10233 HSPA1-2_6-8-like_NBD 7 358 0.0
18 g11137.t25 Gene3D G3DSA:3.30.420.40 - 14 355 1.1E-162
20 g11137.t25 Gene3D G3DSA:3.30.30.30 - 45 91 1.1E-162
19 g11137.t25 Gene3D G3DSA:3.30.420.40 - 165 342 1.1E-162
17 g11137.t25 Gene3D G3DSA:3.90.640.10 Actin; Chain A 206 283 1.1E-162
16 g11137.t25 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 357 486 4.8E-66
21 g11137.t25 Gene3D G3DSA:1.20.1270.10 - 487 590 2.5E-39
26 g11137.t25 MobiDBLite mobidb-lite consensus disorder prediction 607 627 -
2 g11137.t25 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 14 595 0.0
3 g11137.t25 PANTHER PTHR19375:SF382 HEAT SHOCK-RELATED 70 KDA PROTEIN 2 14 595 0.0
8 g11137.t25 PRINTS PR00301 70kDa heat shock protein signature 10 22 9.0E-73
9 g11137.t25 PRINTS PR00301 70kDa heat shock protein signature 32 40 9.0E-73
5 g11137.t25 PRINTS PR00301 70kDa heat shock protein signature 119 139 9.0E-73
10 g11137.t25 PRINTS PR00301 70kDa heat shock protein signature 180 190 9.0E-73
6 g11137.t25 PRINTS PR00301 70kDa heat shock protein signature 308 324 9.0E-73
11 g11137.t25 PRINTS PR00301 70kDa heat shock protein signature 340 360 9.0E-73
4 g11137.t25 PRINTS PR00301 70kDa heat shock protein signature 367 386 9.0E-73
7 g11137.t25 PRINTS PR00301 70kDa heat shock protein signature 448 464 9.0E-73
1 g11137.t25 Pfam PF00012 Hsp70 protein 14 589 1.4E-241
23 g11137.t25 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 10 17 -
25 g11137.t25 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 174 187 -
24 g11137.t25 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 311 325 -
14 g11137.t25 SUPERFAMILY SSF53067 Actin-like ATPase domain 7 164 1.62E-57
15 g11137.t25 SUPERFAMILY SSF53067 Actin-like ATPase domain 168 359 3.06E-70
13 g11137.t25 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 363 520 3.4E-64
12 g11137.t25 SUPERFAMILY SSF100934 Heat shock protein 70kD (HSP70), C-terminal subdomain 515 596 2.88E-32

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values