Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein cognate 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11137 g11137.t27 TTS g11137.t27 14302528 14302528
chr_1 g11137 g11137.t27 isoform g11137.t27 14303113 14305517
chr_1 g11137 g11137.t27 exon g11137.t27.exon1 14303113 14304392
chr_1 g11137 g11137.t27 cds g11137.t27.CDS1 14303113 14304392
chr_1 g11137 g11137.t27 exon g11137.t27.exon2 14304518 14304725
chr_1 g11137 g11137.t27 cds g11137.t27.CDS2 14304518 14304725
chr_1 g11137 g11137.t27 exon g11137.t27.exon3 14305468 14305517
chr_1 g11137 g11137.t27 TSS g11137.t27 14305607 14305607

Sequences

>g11137.t27 Gene=g11137 Length=1538
ACTTACATTTTGATAAATTAACTAATTAAAACTACAAATAAAGGTAAGAAATGGCCGCAA
AAGCTCCAGCAGTTGGTATTGATTTGGGTACAACTTACTCGTGTGTCGGAGTTTTCCAAC
ACGGTAAAGTTGAAATTATTGCCAACGATCAAGGAAACCGTACGACTCCATCGTATGTCG
CATTTACTGATACTGAAAGATTAATTGGTGATGCTGCCAAGAATCAAGTTGCAATGAATC
CAACAAACACCATTTTTGATGCTAAACGTTTGATTGGTCGCAAATTCGATGACCCAGCAG
TTCAATCAGACATGAAGCACTGGCCATTCGAAGTTGTCAGTGTTGAGGGAAAGCCTAAAA
TCAAGGTTACTTATAAGGATGAAGTAAAGACTTTCTTCCCTGAAGAAATTAGTTCAATGG
TTTTGGTTAAAATGAAGGAAACTGCTGAGGCCTATTTGGGCAAGACTGTAACAAATGCAG
TCATTACTGTTCCAGCTTACTTCAATGACTCGCAACGTCAAGCAACAAAGGATTCTGGTA
CCATCTCAGGATTAAATGTTTTGCGTATTATTAACGAACCAACAGCTGCTGCTATTGCCT
ATGGTCTCGATAAGAAGGCTGCAGGTGAACGCAATGTTTTGATTTTCGATTTGGGCGGTG
GTACATTTGATGTTTCAATTCTTTCAATTGATGATGGAATTTTTGAAGTAAAGTCGACAG
CCGGTGACACTCATCTTGGTGGTGAAGATTTTGATAATCGCCTCGTTAATCATTTTGCAC
AAGAGTTCAAACGTAAGCATAAAAAGGATTTGACTTCTAACAAGCGTGCACTTCGACGTC
TTAGAACAGCTTGTGAGCGTGCAAAGAGAACTTTGTCAAGCTCGACTCAAGCCAGTATTG
AAATTGATTCATTGTTCGAGGGTATTGATTTCTACACTTCAATTACTCGTGCACGTTTCG
AAGAGTTGAATGCTGATCTCTTCCGTTCAACAATGGAGCCAGTTGAAAAAGCTATCCGTG
ATGCTAAAATGGACAAAGGAACAATTCATGATATCGTTCTTGTCGGTGGCTCAACTCGTA
TTCCAAAAGTTCAAAAATTACTTCAAGACTTCTTTAACGGCAAAGAGTTGAACAAATCAA
TTAATCCCGATGAGGCCGTCGCTTATGGTGCTGCTGTTCAAGCTGCCATTTTGCACGGAG
ACAAGAGCGAAGAAGTTCAAGACTTGCTTCTTTTGGACGTTACTCCATTGTCACTCGGTA
TTGAAACAGCTGGTGGTGTCATGAGCGTTTTGATTAAACGTAATACAACAATTCCAACCA
AGCAAACTCAAACTTTCACCACCTATTCAGATAATCAACCAGGAGTATTGATTCAAGTAT
TTGAAGGCGAACGTGCTATGACCAAGGATAACAATCTTCTCGGTAAATTCGAACTTGCCG
GTATTCCTCCTGCTCCACGCGGTGTCCCACAAATTGAAGTTACATTTGATATCGATGCAA
ACGGTATTTTGAATGTTACTGCTTTGGAAAAATCAACA

>g11137.t27 Gene=g11137 Length=496
MAAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV
AMNPTNTIFDAKRLIGRKFDDPAVQSDMKHWPFEVVSVEGKPKIKVTYKDEVKTFFPEEI
SSMVLVKMKETAEAYLGKTVTNAVITVPAYFNDSQRQATKDSGTISGLNVLRIINEPTAA
AIAYGLDKKAAGERNVLIFDLGGGTFDVSILSIDDGIFEVKSTAGDTHLGGEDFDNRLVN
HFAQEFKRKHKKDLTSNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITR
ARFEELNADLFRSTMEPVEKAIRDAKMDKGTIHDIVLVGGSTRIPKVQKLLQDFFNGKEL
NKSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMSVLIKRNTT
IPTKQTQTFTTYSDNQPGVLIQVFEGERAMTKDNNLLGKFELAGIPPAPRGVPQIEVTFD
IDANGILNVTALEKST

Protein features from InterProScan

Transcript Database ID Name Start End E.value
24 g11137.t27 CDD cd10233 HSPA1-2_6-8-like_NBD 7 382 0.0
21 g11137.t27 Gene3D G3DSA:3.30.420.40 - 8 377 4.2E-182
23 g11137.t27 Gene3D G3DSA:3.30.30.30 - 69 115 4.2E-182
22 g11137.t27 Gene3D G3DSA:3.30.420.40 - 189 366 4.2E-182
20 g11137.t27 Gene3D G3DSA:3.90.640.10 Actin; Chain A 230 307 4.2E-182
19 g11137.t27 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 378 496 8.7E-62
2 g11137.t27 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 3 496 0.0
3 g11137.t27 PANTHER PTHR19375:SF448 HEAT SHOCK COGNATE 70-KD PROTEIN, TANDEM DUPLICATE 2-RELATED 3 496 0.0
8 g11137.t27 PRINTS PR00301 70kDa heat shock protein signature 6 19 1.6E-89
9 g11137.t27 PRINTS PR00301 70kDa heat shock protein signature 34 46 1.6E-89
12 g11137.t27 PRINTS PR00301 70kDa heat shock protein signature 56 64 1.6E-89
11 g11137.t27 PRINTS PR00301 70kDa heat shock protein signature 143 163 1.6E-89
6 g11137.t27 PRINTS PR00301 70kDa heat shock protein signature 204 214 1.6E-89
5 g11137.t27 PRINTS PR00301 70kDa heat shock protein signature 332 348 1.6E-89
7 g11137.t27 PRINTS PR00301 70kDa heat shock protein signature 364 384 1.6E-89
10 g11137.t27 PRINTS PR00301 70kDa heat shock protein signature 391 410 1.6E-89
4 g11137.t27 PRINTS PR00301 70kDa heat shock protein signature 472 488 1.6E-89
1 g11137.t27 Pfam PF00012 Hsp70 protein 7 496 1.4E-235
16 g11137.t27 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 10 17 -
18 g11137.t27 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 198 211 -
17 g11137.t27 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 335 349 -
15 g11137.t27 SUPERFAMILY SSF53067 Actin-like ATPase domain 7 188 2.59E-72
14 g11137.t27 SUPERFAMILY SSF53067 Actin-like ATPase domain 192 383 1.8E-70
13 g11137.t27 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 387 496 4.97E-48

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values