General information for g11137.t28
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Heat shock 70 kDa protein 1.
Parent gene
- The parent gene g11137 is located on chr_1: 14304417..14305628 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11137 | g11137.t28 | TTS | g11137.t28 | 14302528 | 14302528 |
| chr_1 | g11137 | g11137.t28 | isoform | g11137.t28 | 14303211 | 14304117 |
| chr_1 | g11137 | g11137.t28 | exon | g11137.t28.exon1 | 14303211 | 14303404 |
| chr_1 | g11137 | g11137.t28 | cds | g11137.t28.CDS1 | 14303367 | 14303404 |
| chr_1 | g11137 | g11137.t28 | exon | g11137.t28.exon2 | 14303484 | 14304117 |
| chr_1 | g11137 | g11137.t28 | cds | g11137.t28.CDS2 | 14303484 | 14303658 |
| chr_1 | g11137 | g11137.t28 | TSS | g11137.t28 | NA | NA |
Sequences
>g11137.t28 Gene=g11137 Length=828
TCTGGTACCATCTCAGGATTAAATGTTTTGCGTATTATTAACGAACCAACAGCTGCTGCT
ATTGCCTATGGTCTCGATAAGAAGGCTGCAGGTGAACGCAATGTTTTGATTTTCGATTTG
GGCGGTGGTACATTTGATGTTTCAATTCTTTCAATTGATGATGGAATTTTTGAAGTAAAG
TCGACAGCCGGTGACACTCATCTTGGTGGTGAAGATTTTGATAATCGCCTCGTTAATCAT
TTTGCACAAGAGTTCAAACGTAAGCATAAAAAGGATTTGACTTCTAACAAGCGTGCACTT
CGACGTCTTAGAACAGCTTGTGAGCGTGCAAAGAGAACTTTGTCAAGCTCGACTCAAGCC
AGTATTGAAATTGATTCATTGTTCGAGGGTATTGATTTCTACACTTCAATTACTCGTGCA
CGTTTCGAAGAGTTGAATGCTGATCTCTTCCGTTCAACAATGGAGCCAGTTGAAAAAGCT
ATCCGTGATGCTAAAATGGACAAAGGAACAATTCATGATATCGTTCTTGTCGGTGGCTCA
ACTCGTATTCCAAAAGTTCAAAAATTACTTCAAGACTTCTTTAACGGCAAAGAGTTGAAC
AAATCAATTAATCCCGATGAGGCCGTCGCTTATGATTGTCACTCGGTATTGAAACAGCTG
GTGGTGTCATGAGCGTTTTGATTAAACGTAATACAACAATTCCAACCAAGCAAACTCAAA
CTTTCACCACCTATTCAGATAATCAACCAGGAGTATTGATTCAAGTATTTGAAGGCGAAC
GTGCTATGACCAAGGATAACAATCTTCTCGGTAAATTCGAACTTGCCG
>g11137.t28 Gene=g11137 Length=70
MEPVEKAIRDAKMDKGTIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYDC
HSVLKQLVVS
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 8 | g11137.t28 | Gene3D | G3DSA:3.30.420.40 | - | 1 | 47 | 1.4E-20 |
| 2 | g11137.t28 | PANTHER | PTHR19375 | HEAT SHOCK PROTEIN 70KDA | 1 | 60 | 5.0E-32 |
| 3 | g11137.t28 | PANTHER | PTHR19375:SF168 | HEAT SHOCK 70 KDA PROTEIN 6 | 1 | 60 | 5.0E-32 |
| 4 | g11137.t28 | PRINTS | PR00301 | 70kDa heat shock protein signature | 18 | 34 | 5.7E-11 |
| 5 | g11137.t28 | PRINTS | PR00301 | 70kDa heat shock protein signature | 50 | 70 | 5.7E-11 |
| 1 | g11137.t28 | Pfam | PF00012 | Hsp70 protein | 1 | 60 | 1.1E-21 |
| 7 | g11137.t28 | ProSitePatterns | PS01036 | Heat shock hsp70 proteins family signature 3. | 21 | 35 | - |
| 6 | g11137.t28 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 2 | 58 | 2.09E-17 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below. There were no conditions that were differentially expressed