Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein cognate 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11137 g11137.t29 TTS g11137.t29 14302528 14302528
chr_1 g11137 g11137.t29 isoform g11137.t29 14303279 14305628
chr_1 g11137 g11137.t29 exon g11137.t29.exon1 14303279 14304392
chr_1 g11137 g11137.t29 cds g11137.t29.CDS1 14303281 14304392
chr_1 g11137 g11137.t29 exon g11137.t29.exon2 14304518 14304712
chr_1 g11137 g11137.t29 cds g11137.t29.CDS2 14304518 14304542
chr_1 g11137 g11137.t29 exon g11137.t29.exon3 14305475 14305628
chr_1 g11137 g11137.t29 TSS g11137.t29 14305607 14305607

Sequences

>g11137.t29 Gene=g11137 Length=1463
CCGAAAGTTGCCGAAGATTTCAGTTTGAGTCAAAAATTCAAGTCGATAAGTTGCATTCTA
ATTAAGAGCAGATCTCAAGTCCTTAAAACTATATTTTATAAGTGATTATAAACTTACATT
TTGATAAATTAACTAATTAAAACTACAAATAAAGCTCCAGCAGTTGGTATTGATTTGGGT
ACAACTTACTCGTGTGTCGGAGTTTTCCAACACGGTAAAGTTGAAATTATTGCCAACGAT
CAAGGAAACCGTACGACTCCATCGTATGTCGCATTTACTGATACTGAAAGATTAATTGGT
GATGCTGCCAAGAATCAAGTTGCAATGAATCCAACAAACACCATTTTTGATGCTAAACGT
TTGATTGGTCGCAAATTCGATGACCCAGCAGTTCAATCAGACATGAAGCACTGGCCATTC
GAAGTTGTCAGTGTTGAGGGAAAGCCTAAAATCAAGGTTACTTATAAGGATGAAGTAAAG
ACTTTCTTCCCTGAAGAAATTAGTTCAATGGTTTTGGTTAAAATGAAGGAAACTGCTGAG
GCCTATTTGGGCAAGACTGTAACAAATGCAGTCATTACTGTTCCAGCTTACTTCAATGAC
TCGCAACGTCAAGCAACAAAGGATTCTGGTACCATCTCAGGATTAAATGTTTTGCGTATT
ATTAACGAACCAACAGCTGCTGCTATTGCCTATGGTCTCGATAAGAAGGCTGCAGGTGAA
CGCAATGTTTTGATTTTCGATTTGGGCGGTGGTACATTTGATGTTTCAATTCTTTCAATT
GATGATGGAATTTTTGAAGTAAAGTCGACAGCCGGTGACACTCATCTTGGTGGTGAAGAT
TTTGATAATCGCCTCGTTAATCATTTTGCACAAGAGTTCAAACGTAAGCATAAAAAGGAT
TTGACTTCTAACAAGCGTGCACTTCGACGTCTTAGAACAGCTTGTGAGCGTGCAAAGAGA
ACTTTGTCAAGCTCGACTCAAGCCAGTATTGAAATTGATTCATTGTTCGAGGGTATTGAT
TTCTACACTTCAATTACTCGTGCACGTTTCGAAGAGTTGAATGCTGATCTCTTCCGTTCA
ACAATGGAGCCAGTTGAAAAAGCTATCCGTGATGCTAAAATGGACAAAGGAACAATTCAT
GATATCGTTCTTGTCGGTGGCTCAACTCGTATTCCAAAAGTTCAAAAATTACTTCAAGAC
TTCTTTAACGGCAAAGAGTTGAACAAATCAATTAATCCCGATGAGGCCGTCGCTTATGGT
GCTGCTGTTCAAGCTGCCATTTTGCACGGAGACAAGAGCGAAGAAGTTCAAGACTTGCTT
CTTTTGGACGTTACTCCATTGTCACTCGGTATTGAAACAGCTGGTGGTGTCATGAGCGTT
TTGATTAAACGTAATACAACAATTCCAACCAAGCAAACTCAAACTTTCACCACCTATTCA
GATAATCAACCAGGAGTATTGAT

>g11137.t29 Gene=g11137 Length=379
MNPTNTIFDAKRLIGRKFDDPAVQSDMKHWPFEVVSVEGKPKIKVTYKDEVKTFFPEEIS
SMVLVKMKETAEAYLGKTVTNAVITVPAYFNDSQRQATKDSGTISGLNVLRIINEPTAAA
IAYGLDKKAAGERNVLIFDLGGGTFDVSILSIDDGIFEVKSTAGDTHLGGEDFDNRLVNH
FAQEFKRKHKKDLTSNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRA
RFEELNADLFRSTMEPVEKAIRDAKMDKGTIHDIVLVGGSTRIPKVQKLLQDFFNGKELN
KSINPDEAVAYGAAVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMSVLIKRNTTI
PTKQTQTFTTYSDNQPGVL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
16 g11137.t29 Gene3D G3DSA:3.30.420.40 - 2 316 1.4E-152
18 g11137.t29 Gene3D G3DSA:3.30.30.30 - 8 54 1.4E-152
17 g11137.t29 Gene3D G3DSA:3.30.420.40 - 128 305 1.4E-152
15 g11137.t29 Gene3D G3DSA:3.90.640.10 Actin; Chain A 169 246 1.4E-152
14 g11137.t29 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 317 379 9.2E-26
2 g11137.t29 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 1 379 7.7E-241
3 g11137.t29 PANTHER PTHR19375:SF168 HEAT SHOCK 70 KDA PROTEIN 6 1 379 7.7E-241
6 g11137.t29 PRINTS PR00301 70kDa heat shock protein signature 82 102 1.1E-55
4 g11137.t29 PRINTS PR00301 70kDa heat shock protein signature 143 153 1.1E-55
8 g11137.t29 PRINTS PR00301 70kDa heat shock protein signature 271 287 1.1E-55
7 g11137.t29 PRINTS PR00301 70kDa heat shock protein signature 303 323 1.1E-55
5 g11137.t29 PRINTS PR00301 70kDa heat shock protein signature 330 349 1.1E-55
1 g11137.t29 Pfam PF00012 Hsp70 protein 1 378 1.7E-175
13 g11137.t29 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 137 150 -
12 g11137.t29 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 274 288 -
11 g11137.t29 SUPERFAMILY SSF53067 Actin-like ATPase domain 1 127 7.77E-45
10 g11137.t29 SUPERFAMILY SSF53067 Actin-like ATPase domain 131 322 1.05E-70
9 g11137.t29 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 326 378 2.09E-19

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values