Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein cognate 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11137 g11137.t31 isoform g11137.t31 14303608 14305628
chr_1 g11137 g11137.t31 exon g11137.t31.exon1 14303608 14304392
chr_1 g11137 g11137.t31 cds g11137.t31.CDS1 14303608 14304392
chr_1 g11137 g11137.t31 exon g11137.t31.exon2 14304569 14304725
chr_1 g11137 g11137.t31 cds g11137.t31.CDS2 14304569 14304725
chr_1 g11137 g11137.t31 exon g11137.t31.exon3 14305475 14305628
chr_1 g11137 g11137.t31 TSS g11137.t31 14305607 14305607
chr_1 g11137 g11137.t31 TTS g11137.t31 NA NA

Sequences

>g11137.t31 Gene=g11137 Length=1096
CCGAAAGTTGCCGAAGATTTCAGTTTGAGTCAAAAATTCAAGTCGATAAGTTGCATTCTA
ATTAAGAGCAGATCTCAAGTCCTTAAAACTATATTTTATAAGTGATTATAAACTTACATT
TTGATAAATTAACTAATTAAAACTACAAATAAAGATGGCCGCAAAAGCTCCAGCAGTTGG
TATTGATTTGGGTACAACTTACTCGTGTGTCGGAGTTTTCCAACACGGTAAAGTTGAAAT
TATTGCCAACGATCAAGGAAACCGTACGACTCCATCGTATGTCGCATTTACTGATACTGA
AAGATTAATTGATGCTAAACGTTTGATTGGTCGCAAATTCGATGACCCAGCAGTTCAATC
AGACATGAAGCACTGGCCATTCGAAGTTGTCAGTGTTGAGGGAAAGCCTAAAATCAAGGT
TACTTATAAGGATGAAGTAAAGACTTTCTTCCCTGAAGAAATTAGTTCAATGGTTTTGGT
TAAAATGAAGGAAACTGCTGAGGCCTATTTGGGCAAGACTGTAACAAATGCAGTCATTAC
TGTTCCAGCTTACTTCAATGACTCGCAACGTCAAGCAACAAAGGATTCTGGTACCATCTC
AGGATTAAATGTTTTGCGTATTATTAACGAACCAACAGCTGCTGCTATTGCCTATGGTCT
CGATAAGAAGGCTGCAGGTGAACGCAATGTTTTGATTTTCGATTTGGGCGGTGGTACATT
TGATGTTTCAATTCTTTCAATTGATGATGGAATTTTTGAAGTAAAGTCGACAGCCGGTGA
CACTCATCTTGGTGGTGAAGATTTTGATAATCGCCTCGTTAATCATTTTGCACAAGAGTT
CAAACGTAAGCATAAAAAGGATTTGACTTCTAACAAGCGTGCACTTCGACGTCTTAGAAC
AGCTTGTGAGCGTGCAAAGAGAACTTTGTCAAGCTCGACTCAAGCCAGTATTGAAATTGA
TTCATTGTTCGAGGGTATTGATTTCTACACTTCAATTACTCGTGCACGTTTCGAAGAGTT
GAATGCTGATCTCTTCCGTTCAACAATGGAGCCAGTTGAAAAAGCTATCCGTGATGCTAA
AATGGACAAAGGAACA

>g11137.t31 Gene=g11137 Length=314
MAAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIDAKRLIGR
KFDDPAVQSDMKHWPFEVVSVEGKPKIKVTYKDEVKTFFPEEISSMVLVKMKETAEAYLG
KTVTNAVITVPAYFNDSQRQATKDSGTISGLNVLRIINEPTAAAIAYGLDKKAAGERNVL
IFDLGGGTFDVSILSIDDGIFEVKSTAGDTHLGGEDFDNRLVNHFAQEFKRKHKKDLTSN
KRALRRLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEP
VEKAIRDAKMDKGT

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g11137.t31 Gene3D G3DSA:3.30.420.40 - 8 171 3.0E-138
15 g11137.t31 Gene3D G3DSA:3.30.30.30 - 53 98 3.0E-138
13 g11137.t31 Gene3D G3DSA:3.30.420.40 - 172 312 3.0E-138
12 g11137.t31 Gene3D G3DSA:3.90.640.10 Actin; Chain A 213 290 3.0E-138
2 g11137.t31 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 3 313 1.8E-189
3 g11137.t31 PANTHER PTHR19375:SF448 HEAT SHOCK COGNATE 70-KD PROTEIN, TANDEM DUPLICATE 2-RELATED 3 313 1.8E-189
5 g11137.t31 PRINTS PR00301 70kDa heat shock protein signature 6 19 1.0E-33
6 g11137.t31 PRINTS PR00301 70kDa heat shock protein signature 34 46 1.0E-33
7 g11137.t31 PRINTS PR00301 70kDa heat shock protein signature 126 146 1.0E-33
4 g11137.t31 PRINTS PR00301 70kDa heat shock protein signature 187 197 1.0E-33
1 g11137.t31 Pfam PF00012 Hsp70 protein 7 312 3.7E-136
10 g11137.t31 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 10 17 -
11 g11137.t31 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 181 194 -
9 g11137.t31 SUPERFAMILY SSF53067 Actin-like ATPase domain 7 171 1.77E-61
8 g11137.t31 SUPERFAMILY SSF53067 Actin-like ATPase domain 175 312 9.72E-47

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values