Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein cognate 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11137 g11137.t32 isoform g11137.t32 14303608 14305628
chr_1 g11137 g11137.t32 exon g11137.t32.exon1 14303608 14303755
chr_1 g11137 g11137.t32 cds g11137.t32.CDS1 14303682 14303755
chr_1 g11137 g11137.t32 exon g11137.t32.exon2 14303859 14304392
chr_1 g11137 g11137.t32 cds g11137.t32.CDS2 14303859 14304392
chr_1 g11137 g11137.t32 exon g11137.t32.exon3 14304518 14304725
chr_1 g11137 g11137.t32 cds g11137.t32.CDS3 14304518 14304725
chr_1 g11137 g11137.t32 exon g11137.t32.exon4 14305475 14305628
chr_1 g11137 g11137.t32 TSS g11137.t32 14305607 14305607
chr_1 g11137 g11137.t32 TTS g11137.t32 NA NA

Sequences

>g11137.t32 Gene=g11137 Length=1044
CCGAAAGTTGCCGAAGATTTCAGTTTGAGTCAAAAATTCAAGTCGATAAGTTGCATTCTA
ATTAAGAGCAGATCTCAAGTCCTTAAAACTATATTTTATAAGTGATTATAAACTTACATT
TTGATAAATTAACTAATTAAAACTACAAATAAAGATGGCCGCAAAAGCTCCAGCAGTTGG
TATTGATTTGGGTACAACTTACTCGTGTGTCGGAGTTTTCCAACACGGTAAAGTTGAAAT
TATTGCCAACGATCAAGGAAACCGTACGACTCCATCGTATGTCGCATTTACTGATACTGA
AAGATTAATTGGTGATGCTGCCAAGAATCAAGTTGCAATGAATCCAACAAACACCATTTT
TGATGCTAAACGTTTGATTGGTCGCAAATTCGATGACCCAGCAGTTCAATCAGACATGAA
GCACTGGCCATTCGAAGTTGTCAGTGTTGAGGGAAAGCCTAAAATCAAGGTTACTTATAA
GGATGAAGTAAAGACTTTCTTCCCTGAAGAAATTAGTTCAATGGTTTTGGTTAAAATGAA
GGAAACTGCTGAGGCCTATTTGGGCAAGACTGTAACAAATGCAGTCATTACTGTTCCAGC
TTACTTCAATGACTCGCAACGTCAAGCAACAAAGGATTCTGGTACCATCTCAGGATTAAA
TGTTTTGCGTATTATTAACGAACCAACAGCTGCTGCTATTGCCTATGGTCTCGATAAGAA
GGCTGCAGGTGAACGCAATGTTTTGATTTTCGATTTGGGCGGTGGTACATTTGATGTTTC
AATTCTTTCAATTGATGATGGAATTTTTGAAGTAAAGTCGACAGCCGGTGACACTCATCT
TGGTGGTGAAGATTTTGATAATCGCCTCGTTAATCATTTTGCACAAGAGTTCAAACTATT
GAAATTGATTCATTGTTCGAGGGTATTGATTTCTACACTTCAATTACTCGTGCACGTTTC
GAAGAGTTGAATGCTGATCTCTTCCGTTCAACAATGGAGCCAGTTGAAAAAGCTATCCGT
GATGCTAAAATGGACAAAGGAACA

>g11137.t32 Gene=g11137 Length=271
MAAKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV
AMNPTNTIFDAKRLIGRKFDDPAVQSDMKHWPFEVVSVEGKPKIKVTYKDEVKTFFPEEI
SSMVLVKMKETAEAYLGKTVTNAVITVPAYFNDSQRQATKDSGTISGLNVLRIINEPTAA
AIAYGLDKKAAGERNVLIFDLGGGTFDVSILSIDDGIFEVKSTAGDTHLGGEDFDNRLVN
HFAQEFKLLKLIHCSRVLISTLQLLVHVSKS

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g11137.t32 Gene3D G3DSA:3.30.30.30 - 69 119 5.0E-30
13 g11137.t32 Gene3D G3DSA:3.30.420.40 - 196 263 3.1E-23
2 g11137.t32 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 3 248 4.3E-155
3 g11137.t32 PANTHER PTHR19375:SF448 HEAT SHOCK COGNATE 70-KD PROTEIN, TANDEM DUPLICATE 2-RELATED 3 248 4.3E-155
5 g11137.t32 PRINTS PR00301 70kDa heat shock protein signature 6 19 7.2E-39
6 g11137.t32 PRINTS PR00301 70kDa heat shock protein signature 34 46 7.2E-39
7 g11137.t32 PRINTS PR00301 70kDa heat shock protein signature 56 64 7.2E-39
8 g11137.t32 PRINTS PR00301 70kDa heat shock protein signature 143 163 7.2E-39
4 g11137.t32 PRINTS PR00301 70kDa heat shock protein signature 204 214 7.2E-39
1 g11137.t32 Pfam PF00012 Hsp70 protein 7 252 1.8E-124
11 g11137.t32 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 10 17 -
12 g11137.t32 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 198 211 -
10 g11137.t32 SUPERFAMILY SSF53067 Actin-like ATPase domain 7 188 3.37E-73
9 g11137.t32 SUPERFAMILY SSF53067 Actin-like ATPase domain 192 252 1.64E-20

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values