General information for g11137.t34
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Heat shock 70 kDa protein cognate 4.
Parent gene
- The parent gene g11137 is located on chr_1: 14304417..14305628 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11137 | g11137.t34 | isoform | g11137.t34 | 14303941 | 14305628 |
| chr_1 | g11137 | g11137.t34 | exon | g11137.t34.exon1 | 14303941 | 14304384 |
| chr_1 | g11137 | g11137.t34 | cds | g11137.t34.CDS1 | 14303941 | 14304339 |
| chr_1 | g11137 | g11137.t34 | exon | g11137.t34.exon2 | 14304518 | 14304725 |
| chr_1 | g11137 | g11137.t34 | exon | g11137.t34.exon3 | 14305475 | 14305628 |
| chr_1 | g11137 | g11137.t34 | TSS | g11137.t34 | 14305607 | 14305607 |
| chr_1 | g11137 | g11137.t34 | TTS | g11137.t34 | NA | NA |
Sequences
>g11137.t34 Gene=g11137 Length=806
CCGAAAGTTGCCGAAGATTTCAGTTTGAGTCAAAAATTCAAGTCGATAAGTTGCATTCTA
ATTAAGAGCAGATCTCAAGTCCTTAAAACTATATTTTATAAGTGATTATAAACTTACATT
TTGATAAATTAACTAATTAAAACTACAAATAAAGATGGCCGCAAAAGCTCCAGCAGTTGG
TATTGATTTGGGTACAACTTACTCGTGTGTCGGAGTTTTCCAACACGGTAAAGTTGAAAT
TATTGCCAACGATCAAGGAAACCGTACGACTCCATCGTATGTCGCATTTACTGATACTGA
AAGATTAATTGGTGATGCTGCCAAGAATCAAGTTGCAATGAATCCAACAAACACCATTTT
TGCGTTTGATTGGTCGCAAATTCGATGACCCAGCAGTTCAATCAGACATGAAGCACTGGC
CATTCGAAGTTGTCAGTGTTGAGGGAAAGCCTAAAATCAAGGTTACTTATAAGGATGAAG
TAAAGACTTTCTTCCCTGAAGAAATTAGTTCAATGGTTTTGGTTAAAATGAAGGAAACTG
CTGAGGCCTATTTGGGCAAGACTGTAACAAATGCAGTCATTACTGTTCCAGCTTACTTCA
ATGACTCGCAACGTCAAGCAACAAAGGATTCTGGTACCATCTCAGGATTAAATGTTTTGC
GTATTATTAACGAACCAACAGCTGCTGCTATTGCCTATGGTCTCGATAAGAAGGCTGCAG
GTGAACGCAATGTTTTGATTTTCGATTTGGGCGGTGGTACATTTGATGTTTCAATTCTTT
CAATTGATGATGGAATTTTTGAAGTA
>g11137.t34 Gene=g11137 Length=133
MKHWPFEVVSVEGKPKIKVTYKDEVKTFFPEEISSMVLVKMKETAEAYLGKTVTNAVITV
PAYFNDSQRQATKDSGTISGLNVLRIINEPTAAAIAYGLDKKAAGERNVLIFDLGGGTFD
VSILSIDDGIFEV
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 11 | g11137.t34 | Gene3D | G3DSA:3.30.30.30 | - | 1 | 36 | 1.7E-57 |
| 10 | g11137.t34 | Gene3D | G3DSA:3.30.420.40 | - | 37 | 101 | 1.7E-57 |
| 9 | g11137.t34 | Gene3D | G3DSA:3.30.420.40 | - | 102 | 133 | 1.7E-57 |
| 2 | g11137.t34 | PANTHER | PTHR19375 | HEAT SHOCK PROTEIN 70KDA | 1 | 133 | 6.9E-77 |
| 3 | g11137.t34 | PANTHER | PTHR19375:SF168 | HEAT SHOCK 70 KDA PROTEIN 6 | 1 | 133 | 6.9E-77 |
| 4 | g11137.t34 | PRINTS | PR00301 | 70kDa heat shock protein signature | 56 | 76 | 1.6E-15 |
| 5 | g11137.t34 | PRINTS | PR00301 | 70kDa heat shock protein signature | 117 | 127 | 1.6E-15 |
| 1 | g11137.t34 | Pfam | PF00012 | Hsp70 protein | 1 | 133 | 8.3E-63 |
| 8 | g11137.t34 | ProSitePatterns | PS00329 | Heat shock hsp70 proteins family signature 2. | 111 | 124 | - |
| 7 | g11137.t34 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 1 | 101 | 1.3E-35 |
| 6 | g11137.t34 | SUPERFAMILY | SSF53067 | Actin-like ATPase domain | 106 | 132 | 7.18E-7 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
