General information for g11137.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Heat shock 70 kDa protein cognate 4.
Parent gene
- The parent gene g11137 is located on chr_1: 14304417..14305628 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11137 | g11137.t4 | TTS | g11137.t4 | 14302528 | 14302528 |
| chr_1 | g11137 | g11137.t4 | isoform | g11137.t4 | 14302645 | 14303541 |
| chr_1 | g11137 | g11137.t4 | exon | g11137.t4.exon1 | 14302645 | 14303065 |
| chr_1 | g11137 | g11137.t4 | cds | g11137.t4.CDS1 | 14302645 | 14302953 |
| chr_1 | g11137 | g11137.t4 | exon | g11137.t4.exon2 | 14303211 | 14303541 |
| chr_1 | g11137 | g11137.t4 | TSS | g11137.t4 | NA | NA |
Sequences
>g11137.t4 Gene=g11137 Length=752
TTCTTTAACGGCAAAGAGTTGAACAAATCAATTAATCCCGATGAGGCCGTCGCTTATGGT
GCTGCTGTTCAAGCTGCCATTTTGCACGGAGACAAGAGCGAAGAAGTTCAAGACTTGCTT
CTTTTGGACGTTACTCCATTGTCACTCGGTATTGAAACAGCTGGTGGTGTCATGAGCGTT
TTGATTAAACGTAATACAACAATTCCAACCAAGCAAACTCAAACTTTCACCACCTATTCA
GATAATCAACCAGGAGTATTGATTCAAGTATTTGAAGGCGAACGTGCTATGACCAAGGAT
AACAATCTTCTCGGTAAATTCGAACTTGCCGCAAAGAAGATATCGAACGTATGGTTAATG
AAGCTGAGAAATACCGTTCAGAGGATGATGCACAAAAAGATCGCATTGCAGCCAAGAACG
GTTTGGAATCATACTGCTTCAACATGAAGGCTACAATGGAAGATGATAAATTGAAGGATA
AGATCTCTGAAAGTGACAAGAAGACCATTTTGGACAAATGCAATGATACTATTAAATGGC
TCGATGCAAATCAATTGGGTGAAAAGGAAGAATATGAACACCGTCAAAAAGAATTAGAAG
GAATTTGCAATCCAATTATCACTAAATTATATCAATCTGCTGGTGGTGCTCCTGGTGGTA
TGCCTGGCTTCCCTGGAGCTGGTGCAGCTGGCGGTGGCGGCGCAGCAGGAGCTGGTGCAG
GATCAGGTCCAACAATTGAAGAAGTCGACTAA
>g11137.t4 Gene=g11137 Length=102
MKATMEDDKLKDKISESDKKTILDKCNDTIKWLDANQLGEKEEYEHRQKELEGICNPIIT
KLYQSAGGAPGGMPGFPGAGAAGGGGAAGAGAGSGPTIEEVD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g11137.t4 | Gene3D | G3DSA:1.20.1270.10 | - | 1 | 65 | 2.6E-21 |
| 4 | g11137.t4 | MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 102 | - |
| 1 | g11137.t4 | PANTHER | PTHR19375:SF458 | SI:CH211-199O1.2 | 1 | 75 | 2.4E-25 |
| 2 | g11137.t4 | PANTHER | PTHR19375 | HEAT SHOCK PROTEIN 70KDA | 1 | 75 | 2.4E-25 |
| 3 | g11137.t4 | SUPERFAMILY | SSF100934 | Heat shock protein 70kD (HSP70), C-terminal subdomain | 1 | 71 | 8.24E-27 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
