Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein cognate 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11137 g11137.t7 TTS g11137.t7 14302528 14302528
chr_1 g11137 g11137.t7 isoform g11137.t7 14302645 14303917
chr_1 g11137 g11137.t7 exon g11137.t7.exon1 14302645 14303146
chr_1 g11137 g11137.t7 cds g11137.t7.CDS1 14303139 14303146
chr_1 g11137 g11137.t7 exon g11137.t7.exon2 14303211 14303917
chr_1 g11137 g11137.t7 cds g11137.t7.CDS2 14303211 14303658
chr_1 g11137 g11137.t7 TSS g11137.t7 NA NA

Sequences

>g11137.t7 Gene=g11137 Length=1209
TCTTGGTGGTGAAGATTTTGATAATCGCCTCGTTAATCATTTTGCACAAGAGTTCAAACG
TAAGCATAAAAAGGATTTGACTTCTAACAAGCGTGCACTTCGACGTCTTAGAACAGCTTG
TGAGCGTGCAAAGAGAACTTTGTCAAGCTCGACTCAAGCCAGTATTGAAATTGATTCATT
GTTCGAGGGTATTGATTTCTACACTTCAATTACTCGTGCACGTTTCGAAGAGTTGAATGC
TGATCTCTTCCGTTCAACAATGGAGCCAGTTGAAAAAGCTATCCGTGATGCTAAAATGGA
CAAAGGAACAATTCATGATATCGTTCTTGTCGGTGGCTCAACTCGTATTCCAAAAGTTCA
AAAATTACTTCAAGACTTCTTTAACGGCAAAGAGTTGAACAAATCAATTAATCCCGATGA
GGCCGTCGCTTATGGTGCTGCTGTTCAAGCTGCCATTTTGCACGGAGACAAGAGCGAAGA
AGTTCAAGACTTGCTTCTTTTGGACGTTACTCCATTGTCACTCGGTATTGAAACAGCTGG
TGGTGTCATGAGCGTTTTGATTAAACGTAATACAACAATTCCAACCAAGCAAACTCAAAC
TTTCACCACCTATTCAGATAATCAACCAGGAGTATTGATTCAAGTATTTGAAGGCGAACG
TGCTATGACCAAGGATAACAATCTTCTCGGTAAATTCGAACTTGCCGTATTTTGAATGTT
ACTGCTTTGGAAAAATCAACAAATAAGGAAAACAAGATCACAATTACAAACGACAAGGGA
CGTTTGAGCAAAGAAGATATCGAACGTATGGTTAATGAAGCTGAGAAATACCGTTCAGAG
GATGATGCACAAAAAGATCGCATTGCAGCCAAGAACGGTTTGGAATCATACTGCTTCAAC
ATGAAGGCTACAATGGAAGATGATAAATTGAAGGATAAGATCTCTGAAAGTGACAAGAAG
ACCATTTTGGACAAATGCAATGATACTATTAAATGGCTCGATGCAAATCAATTGGGTGAA
AAGGAAGAATATGAACACCGTCAAAAAGAATTAGAAGGAATTTGCAATCCAATTATCACT
AAATTATATCAATCTGCTGGTGGTGCTCCTGGTGGTATGCCTGGCTTCCCTGGAGCTGGT
GCAGCTGGCGGTGGCGGCGCAGCAGGAGCTGGTGCAGGATCAGGTCCAACAATTGAAGAA
GTCGACTAA

>g11137.t7 Gene=g11137 Length=151
MEPVEKAIRDAKMDKGTIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA
AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMSVLIKRNTTIPTKQTQTFTTYSD
NQPGVLIQVFEGERAMTKDNNLLGKFELAVF

Protein features from InterProScan

Transcript Database ID Name Start End E.value
11 g11137.t7 Gene3D G3DSA:3.30.420.40 - 1 47 9.5E-20
10 g11137.t7 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 62 150 9.1E-41
2 g11137.t7 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 1 149 3.5E-89
3 g11137.t7 PANTHER PTHR19375:SF448 HEAT SHOCK COGNATE 70-KD PROTEIN, TANDEM DUPLICATE 2-RELATED 1 149 3.5E-89
4 g11137.t7 PRINTS PR00301 70kDa heat shock protein signature 18 34 6.8E-36
5 g11137.t7 PRINTS PR00301 70kDa heat shock protein signature 50 70 6.8E-36
6 g11137.t7 PRINTS PR00301 70kDa heat shock protein signature 77 96 6.8E-36
1 g11137.t7 Pfam PF00012 Hsp70 protein 1 148 1.7E-62
9 g11137.t7 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 21 35 -
8 g11137.t7 SUPERFAMILY SSF53067 Actin-like ATPase domain 2 69 1.02E-21
7 g11137.t7 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 73 148 3.92E-31

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values