Gene loci information

Transcript annotation

  • This transcript has been annotated as Heat shock 70 kDa protein cognate 4.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11137 g11137.t8 TTS g11137.t8 14302528 14302528
chr_1 g11137 g11137.t8 isoform g11137.t8 14302645 14303917
chr_1 g11137 g11137.t8 exon g11137.t8.exon1 14302645 14303244
chr_1 g11137 g11137.t8 cds g11137.t8.CDS1 14302645 14303244
chr_1 g11137 g11137.t8 exon g11137.t8.exon2 14303287 14303917
chr_1 g11137 g11137.t8 cds g11137.t8.CDS2 14303287 14303658
chr_1 g11137 g11137.t8 TSS g11137.t8 NA NA

Sequences

>g11137.t8 Gene=g11137 Length=1231
TCTTGGTGGTGAAGATTTTGATAATCGCCTCGTTAATCATTTTGCACAAGAGTTCAAACG
TAAGCATAAAAAGGATTTGACTTCTAACAAGCGTGCACTTCGACGTCTTAGAACAGCTTG
TGAGCGTGCAAAGAGAACTTTGTCAAGCTCGACTCAAGCCAGTATTGAAATTGATTCATT
GTTCGAGGGTATTGATTTCTACACTTCAATTACTCGTGCACGTTTCGAAGAGTTGAATGC
TGATCTCTTCCGTTCAACAATGGAGCCAGTTGAAAAAGCTATCCGTGATGCTAAAATGGA
CAAAGGAACAATTCATGATATCGTTCTTGTCGGTGGCTCAACTCGTATTCCAAAAGTTCA
AAAATTACTTCAAGACTTCTTTAACGGCAAAGAGTTGAACAAATCAATTAATCCCGATGA
GGCCGTCGCTTATGGTGCTGCTGTTCAAGCTGCCATTTTGCACGGAGACAAGAGCGAAGA
AGTTCAAGACTTGCTTCTTTTGGACGTTACTCCATTGTCACTCGGTATTGAAACAGCTGG
TGGTGTCATGAGCGTTTTGATTAAACGTAATACAACAATTCCAACCAAGCAAACTCAAAC
TTTCACCACCTATTCAGATAATCAACCAGGAGATAACAATCTTCTCGGTAAATTCGAACT
TGCCGGTATTCCTCCTGCTCCACGCGGTGTCCCACAAATTGAAGTTACATTTGATATCGA
TGCAAACGGTATTTTGAATGTTACTGCTTTGGAAAAATCAACAAATAAGGAAAACAAGAT
CACAATTACAAACGACAAGGGACGTTTGAGCAAAGAAGATATCGAACGTATGGTTAATGA
AGCTGAGAAATACCGTTCAGAGGATGATGCACAAAAAGATCGCATTGCAGCCAAGAACGG
TTTGGAATCATACTGCTTCAACATGAAGGCTACAATGGAAGATGATAAATTGAAGGATAA
GATCTCTGAAAGTGACAAGAAGACCATTTTGGACAAATGCAATGATACTATTAAATGGCT
CGATGCAAATCAATTGGGTGAAAAGGAAGAATATGAACACCGTCAAAAAGAATTAGAAGG
AATTTGCAATCCAATTATCACTAAATTATATCAATCTGCTGGTGGTGCTCCTGGTGGTAT
GCCTGGCTTCCCTGGAGCTGGTGCAGCTGGCGGTGGCGGCGCAGCAGGAGCTGGTGCAGG
ATCAGGTCCAACAATTGAAGAAGTCGACTAA

>g11137.t8 Gene=g11137 Length=323
MEPVEKAIRDAKMDKGTIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEAVAYGA
AVQAAILHGDKSEEVQDLLLLDVTPLSLGIETAGGVMSVLIKRNTTIPTKQTQTFTTYSD
NQPGDNNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVTALEKSTNKENKITITNDK
GRLSKEDIERMVNEAEKYRSEDDAQKDRIAAKNGLESYCFNMKATMEDDKLKDKISESDK
KTILDKCNDTIKWLDANQLGEKEEYEHRQKELEGICNPIITKLYQSAGGAPGGMPGFPGA
GAAGGGGAAGAGAGSGPTIEEVD

Protein features from InterProScan

Transcript Database ID Name Start End E.value
14 g11137.t8 Gene3D G3DSA:3.30.420.40 - 1 47 3.5E-19
13 g11137.t8 Gene3D G3DSA:2.60.34.10 Substrate Binding Domain Of DNAk; Chain A 67 182 7.2E-51
15 g11137.t8 Gene3D G3DSA:1.20.1270.10 - 183 286 7.8E-40
12 g11137.t8 MobiDBLite mobidb-lite consensus disorder prediction 303 323 -
2 g11137.t8 PANTHER PTHR19375 HEAT SHOCK PROTEIN 70KDA 1 292 7.0E-160
3 g11137.t8 PANTHER PTHR19375:SF382 HEAT SHOCK-RELATED 70 KDA PROTEIN 2 1 292 7.0E-160
5 g11137.t8 PRINTS PR00301 70kDa heat shock protein signature 18 34 9.5E-47
6 g11137.t8 PRINTS PR00301 70kDa heat shock protein signature 50 70 9.5E-47
7 g11137.t8 PRINTS PR00301 70kDa heat shock protein signature 77 96 9.5E-47
4 g11137.t8 PRINTS PR00301 70kDa heat shock protein signature 144 160 9.5E-47
1 g11137.t8 Pfam PF00012 Hsp70 protein 1 285 4.4E-92
11 g11137.t8 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 21 35 -
10 g11137.t8 SUPERFAMILY SSF53067 Actin-like ATPase domain 2 69 4.64E-21
9 g11137.t8 SUPERFAMILY SSF100920 Heat shock protein 70kD (HSP70), peptide-binding domain 73 216 1.57E-54
8 g11137.t8 SUPERFAMILY SSF100934 Heat shock protein 70kD (HSP70), C-terminal subdomain 211 292 9.81E-33

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0005524 ATP binding MF
GO:0016887 ATP hydrolysis activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values