General information for g11137.t9
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Heat shock 70 kDa protein cognate 4.
Parent gene
- The parent gene g11137 is located on chr_1: 14304417..14305628 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11137 | g11137.t9 | TTS | g11137.t9 | 14302528 | 14302528 |
| chr_1 | g11137 | g11137.t9 | isoform | g11137.t9 | 14302645 | 14303986 |
| chr_1 | g11137 | g11137.t9 | exon | g11137.t9.exon1 | 14302645 | 14303300 |
| chr_1 | g11137 | g11137.t9 | cds | g11137.t9.CDS1 | 14302645 | 14303253 |
| chr_1 | g11137 | g11137.t9 | exon | g11137.t9.exon2 | 14303913 | 14303986 |
| chr_1 | g11137 | g11137.t9 | TSS | g11137.t9 | NA | NA |
Sequences
>g11137.t9 Gene=g11137 Length=730
ATTTGATGTTTCAATTCTTTCAATTGATGATGGAATTTTTGAAGTAAAGTCGACAGCCGG
TGACACTCATCTTGATAATCAACCAGGAGTATTGATTCAAGTATTTGAAGGCGAACGTGC
TATGACCAAGGATAACAATCTTCTCGGTAAATTCGAACTTGCCGGTATTCCTCCTGCTCC
ACGCGGTGTCCCACAAATTGAAGTTACATTTGATATCGATGCAAACGGTATTTTGAATGT
TACTGCTTTGGAAAAATCAACAAATAAGGAAAACAAGATCACAATTACAAACGACAAGGG
ACGTTTGAGCAAAGAAGATATCGAACGTATGGTTAATGAAGCTGAGAAATACCGTTCAGA
GGATGATGCACAAAAAGATCGCATTGCAGCCAAGAACGGTTTGGAATCATACTGCTTCAA
CATGAAGGCTACAATGGAAGATGATAAATTGAAGGATAAGATCTCTGAAAGTGACAAGAA
GACCATTTTGGACAAATGCAATGATACTATTAAATGGCTCGATGCAAATCAATTGGGTGA
AAAGGAAGAATATGAACACCGTCAAAAAGAATTAGAAGGAATTTGCAATCCAATTATCAC
TAAATTATATCAATCTGCTGGTGGTGCTCCTGGTGGTATGCCTGGCTTCCCTGGAGCTGG
TGCAGCTGGCGGTGGCGGCGCAGCAGGAGCTGGTGCAGGATCAGGTCCAACAATTGAAGA
AGTCGACTAA
>g11137.t9 Gene=g11137 Length=202
MTKDNNLLGKFELAGIPPAPRGVPQIEVTFDIDANGILNVTALEKSTNKENKITITNDKG
RLSKEDIERMVNEAEKYRSEDDAQKDRIAAKNGLESYCFNMKATMEDDKLKDKISESDKK
TILDKCNDTIKWLDANQLGEKEEYEHRQKELEGICNPIITKLYQSAGGAPGGMPGFPGAG
AAGGGGAAGAGAGSGPTIEEVD
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g11137.t9 | Gene3D | G3DSA:2.60.34.10 | Substrate Binding Domain Of DNAk; Chain A | 1 | 61 | 9.8E-28 |
| 8 | g11137.t9 | Gene3D | G3DSA:1.20.1270.10 | - | 62 | 165 | 2.7E-40 |
| 6 | g11137.t9 | MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 202 | - |
| 2 | g11137.t9 | PANTHER | PTHR19375:SF458 | SI:CH211-199O1.2 | 1 | 174 | 1.8E-88 |
| 3 | g11137.t9 | PANTHER | PTHR19375 | HEAT SHOCK PROTEIN 70KDA | 1 | 174 | 1.8E-88 |
| 1 | g11137.t9 | Pfam | PF00012 | Hsp70 protein | 1 | 164 | 2.1E-43 |
| 5 | g11137.t9 | SUPERFAMILY | SSF100920 | Heat shock protein 70kD (HSP70), peptide-binding domain | 1 | 95 | 2.49E-33 |
| 4 | g11137.t9 | SUPERFAMILY | SSF100934 | Heat shock protein 70kD (HSP70), C-terminal subdomain | 90 | 171 | 3.66E-33 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0016887 | ATP hydrolysis activity | MF |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
