Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Allatostatin-A receptor.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11147 g11147.t2 isoform g11147.t2 14324865 14327358
chr_1 g11147 g11147.t2 exon g11147.t2.exon1 14324865 14325037
chr_1 g11147 g11147.t2 exon g11147.t2.exon2 14326500 14327358
chr_1 g11147 g11147.t2 cds g11147.t2.CDS1 14326609 14327250
chr_1 g11147 g11147.t2 TSS g11147.t2 NA NA
chr_1 g11147 g11147.t2 TTS g11147.t2 NA NA

Sequences

>g11147.t2 Gene=g11147 Length=1032
GGAGTGGATTATTCATTGAGTTGGTGGCCATTTGGCGAGTTCTGGTGTAAAACTGTGCAA
TTTTTAATATTTTGCACAGCATATATATCAATATATACCCTTGTGCTAATGTCACTTGAT
CGCTATTTAGCAGTGTGTTTTCCTGTGAGTCGTGTTAGAAATGAACGAAATACAATTATA
TCAATTTTTGCACTATGGTTTATTGTATTACTGACTAATTTGCCAGTATTTCATGCACAT
GGAATTAATGAATATGTTTACAATGATAGAAATTTAACCAGCTGTACTTTTCTCGATGAC
AACGAATTGATTTCATGGAGTACTTTTCACGTGTCATTTTTTACAAGCAGTTACCTCATG
CCCTTACTTTTCATATCAATTTTATATTTTCTGATGCTTCTTCGTCTTTGGAAAAGCAAT
TTAACACAATCATCCGAATCGAAACGGGGAAAAAGAAGAGTAACGAGACTTGTTCTTGTT
ATAGTTGCATGCTTTGCAATACTTTGGCTGCCAATTCAATCTATATTACTTTTAAAAAGT
CTCAAAATGTATGAAGCGACAACGCACTTGACTATTGCATTACAAATAAGTGCCCATATA
CTCGCCTATGCATCGAGTTGTATTAATCCGCTGTTGTACGCTTTTCTTAGTGAGAATTTT
CGCAAAAGTTTCCGAAAGGTAATCATGATTTTTTCTTTCCTTCCCATTCCACTTTACCCT
CAATTCATCTCTTATCTGTTCAATCTTTGACACCTTTGTGTTATGTATAAAATTAAATGT
TATTCACAGATAATTTATTGCCATCCATCGAGTAATTCACGGTACTTTCCAACAGCCACA
AAATTCACAGCAACAACTGATTTGTATTTATGATGATTTACCGGCAGAGAATAGAAGCAT
TCCATTTCTATTGATTCTTGATTTATTCAAAGAATGTCGATAAATGTAGATACTTGCGGC
AAAAAGTCCTCCTCCTGACGCCAATCGACAACCGAGACAATCATCTTCTTCATTATTCTT
ATTTGATGACAT

>g11147.t2 Gene=g11147 Length=213
MSLDRYLAVCFPVSRVRNERNTIISIFALWFIVLLTNLPVFHAHGINEYVYNDRNLTSCT
FLDDNELISWSTFHVSFFTSSYLMPLLFISILYFLMLLRLWKSNLTQSSESKRGKRRVTR
LVLVIVACFAILWLPIQSILLLKSLKMYEATTHLTIALQISAHILAYASSCINPLLYAFL
SENFRKSFRKVIMIFSFLPIPLYPQFISYLFNL

Protein features from InterProScan

Transcript Database ID Name Start End E.value
8 g11147.t2 Gene3D G3DSA:1.20.1070.10 - 1 197 2.1E-44
2 g11147.t2 PANTHER PTHR24229 NEUROPEPTIDES RECEPTOR 1 188 2.3E-36
4 g11147.t2 PRINTS PR00237 Rhodopsin-like GPCR superfamily signature 21 42 1.9E-18
5 g11147.t2 PRINTS PR00237 Rhodopsin-like GPCR superfamily signature 74 97 1.9E-18
6 g11147.t2 PRINTS PR00237 Rhodopsin-like GPCR superfamily signature 118 142 1.9E-18
3 g11147.t2 PRINTS PR00237 Rhodopsin-like GPCR superfamily signature 159 185 1.9E-18
1 g11147.t2 Pfam PF00001 7 transmembrane receptor (rhodopsin family) 1 177 4.1E-29
9 g11147.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 1 20 -
18 g11147.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 21 41 -
14 g11147.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 42 81 -
16 g11147.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 82 101 -
10 g11147.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 102 120 -
15 g11147.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 121 142 -
12 g11147.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 143 153 -
19 g11147.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 154 179 -
11 g11147.t2 Phobius CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the cytoplasm. 180 190 -
17 g11147.t2 Phobius TRANSMEMBRANE Region of a membrane-bound protein predicted to be embedded in the membrane. 191 211 -
13 g11147.t2 Phobius NON_CYTOPLASMIC_DOMAIN Region of a membrane-bound protein predicted to be outside the membrane, in the extracellular region. 212 213 -
25 g11147.t2 ProSiteProfiles PS50262 G-protein coupled receptors family 1 profile. 1 177 29.559
7 g11147.t2 SUPERFAMILY SSF81321 Family A G protein-coupled receptor-like 1 193 1.83E-36
24 g11147.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 21 43 -
22 g11147.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 76 98 -
21 g11147.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 119 141 -
20 g11147.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 156 178 -
23 g11147.t2 TMHMM TMhelix Region of a membrane-bound protein predicted to be embedded in the membrane. 191 210 -

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0007186 G protein-coupled receptor signaling pathway BP
GO:0016021 integral component of membrane CC
GO:0004930 G protein-coupled receptor activity MF

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values