General information for g11155.t2
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Putative Aurora/IPL1-related protein kinase 2.
Parent gene
- The parent gene g11155 is located on chr_1: 14357770..14358513 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11155 | g11155.t2 | TTS | g11155.t2 | 14356263 | 14356263 |
| chr_1 | g11155 | g11155.t2 | isoform | g11155.t2 | 14356868 | 14357703 |
| chr_1 | g11155 | g11155.t2 | exon | g11155.t2.exon1 | 14356868 | 14357385 |
| chr_1 | g11155 | g11155.t2 | cds | g11155.t2.CDS1 | 14357183 | 14357385 |
| chr_1 | g11155 | g11155.t2 | exon | g11155.t2.exon2 | 14357458 | 14357604 |
| chr_1 | g11155 | g11155.t2 | cds | g11155.t2.CDS2 | 14357458 | 14357524 |
| chr_1 | g11155 | g11155.t2 | exon | g11155.t2.exon3 | 14357661 | 14357703 |
| chr_1 | g11155 | g11155.t2 | TSS | g11155.t2 | 14357815 | 14357815 |
Sequences
>g11155.t2 Gene=g11155 Length=708
CCTGAAAATTTGTTACTTGGACATGACGATCAATTAAAAATTGCTGATTTTGGATGGTCA
GTTCATGAACCAAATTCGCAACGTACAACTCTATGTGGCACATTTGATTATCTTAGTCCT
GAAATGGTTCAAGGAAATCCTCATTCAAAGACTGTTGACTTATGGAGTATTGGTGTTTTA
GCTTATGAATTAATTGTTGGTTCAGCTCCATTCCATCATGATGAATATGACATTACTTAT
AGAAGGATTATGAATGTTCAATATACAGTGCCCAATTTCGTTTCTAAGCCAGCTGTACAC
TTTATAGGAAGTCTTTTGGTATTCGATCCTAAGAAACGCATGCCATTATCGCAACTCATC
AATCATCCTTGGCTCAAATTTGATGCAAAGTAGTTATACAACAGAAGATTGAACAACTAA
TCCTTATGAGATATTATAATCCCATAAAGTTCTTTAAACTAATACGATATATTTCGAATA
AGTCATATTAAAATTTATACATTTCTTATCCACTTAGGTAATTAGTGAGAAACAAATTAA
AAGGTTTCATTCTTTTTAAAAAAAAAATTATAAGAATTTTTATCTAACATTCAATGATCA
ATTGTGCAAAAGAAACGTTATTCTTGATTCCATTGAAATTTTTGTATAAGAAAAAGTGAA
TAAAATTTAACGGTCCAAAAGTTCTCAATAATCAAGACAAACATTACA
>g11155.t2 Gene=g11155 Length=89
MVQGNPHSKTVDLWSIGVLAYELIVGSAPFHHDEYDITYRRIMNVQYTVPNFVSKPAVHF
IGSLLVFDPKKRMPLSQLINHPWLKFDAK
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 5 | g11155.t2 | Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1 | 89 | 0.000 |
| 2 | g11155.t2 | PANTHER | PTHR24350:SF0 | AURORA A | 1 | 85 | 0.000 |
| 3 | g11155.t2 | PANTHER | PTHR24350 | SERINE/THREONINE-PROTEIN KINASE IAL-RELATED | 1 | 85 | 0.000 |
| 1 | g11155.t2 | Pfam | PF00069 | Protein kinase domain | 2 | 84 | 0.000 |
| 6 | g11155.t2 | ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 84 | 14.521 |
| 4 | g11155.t2 | SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 2 | 85 | 0.000 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0005524 | ATP binding | MF |
| GO:0004672 | protein kinase activity | MF |
| GO:0006468 | protein phosphorylation | BP |
KEGG
Orthology
This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
