Gene loci information

Transcript annotation

  • This transcript has been annotated as Putative Deoxynucleoside kinase.

Parent gene

Gene structure

  • The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.

Chromosome Gene Transcript Category ID Start End
chr_1 g11158 g11158.t5 TTS g11158.t5 14368486 14368486
chr_1 g11158 g11158.t5 isoform g11158.t5 14368586 14369294
chr_1 g11158 g11158.t5 exon g11158.t5.exon1 14368586 14369061
chr_1 g11158 g11158.t5 cds g11158.t5.CDS1 14368586 14369061
chr_1 g11158 g11158.t5 exon g11158.t5.exon2 14369160 14369294
chr_1 g11158 g11158.t5 cds g11158.t5.CDS2 14369160 14369175
chr_1 g11158 g11158.t5 TSS g11158.t5 14369357 14369357

Sequences

>g11158.t5 Gene=g11158 Length=611
ATGTCAAGTTTGAAGAAGACAGTATTTATAGAAGGTAATACTGCGTCCGGCAAGTCAACA
TTGCTTAAATACTTTCAAAAATTTGATGAAATTCTCGTTTTACAAGAAGATATCGAAAAA
TGGACAAATTTTCATATTTCTTTCAGTTTCCATTTCAAAGTTATGCCACTTTAACTCGAT
TGAGACAACATCTTCAAAATTCGAATAAAGCAATAAAAATGATGGAAAGATCTCTTTTCT
CTGCAAGGCATATTTTTGTTGAAGCTCAAAAAAATTTGAATCTTATGCATGAAGGAAATT
ATCATGTGTTGCAAGAATGGTACGATTATATCGATGAATATCATAAAATTCAAACTGATC
TCTTTATTTACATTCAAACTGATCCGTACGTTGCATTTAAACGAATACAAGAACGTGCAA
GGAAGGAAGAAAAGGATATTACGTTTGAGTATTTAAAGAAAATACATCAGCTTCATGAAG
AGCTATTTATTGAGAGAGCCAATATATTACCTGGAAAAGTGTTGGTAATTGATGGAAATT
TGAATCAAACAGAGATGATGGAAGAATTCAAGAAATGTGAATATGAAATATTCAGTTTTA
TTGAATCTTAA

>g11158.t5 Gene=g11158 Length=163
MDKFSYFFQFPFQSYATLTRLRQHLQNSNKAIKMMERSLFSARHIFVEAQKNLNLMHEGN
YHVLQEWYDYIDEYHKIQTDLFIYIQTDPYVAFKRIQERARKEEKDITFEYLKKIHQLHE
ELFIERANILPGKVLVIDGNLNQTEMMEEFKKCEYEIFSFIES

Protein features from InterProScan

Transcript Database ID Name Start End E.value
6 g11158.t5 Coils Coil Coil 18 38 -
5 g11158.t5 Gene3D G3DSA:3.40.50.300 - 3 161 6.2E-39
2 g11158.t5 PANTHER PTHR10513:SF24 THYMIDINE KINASE 2, MITOCHONDRIAL 10 152 1.8E-37
3 g11158.t5 PANTHER PTHR10513 DEOXYNUCLEOSIDE KINASE 10 152 1.8E-37
7 g11158.t5 PIRSF PIRSF000705 DNK 3 163 2.9E-38
1 g11158.t5 Pfam PF01712 Deoxynucleoside kinase 8 149 7.1E-28
4 g11158.t5 SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases 8 157 1.03E-19

Transmembrane regions from TMHMM

Disordered region

IUPRED3 score over 0.5 is predictive of a disordered region.

GO terms from InterProScan

GOID TERM ONTOLOGY
GO:0019136 deoxynucleoside kinase activity MF
GO:0005524 ATP binding MF
GO:0006139 nucleobase-containing compound metabolic process BP

KEGG

Orthology

This gene did not have any KEGG ortholog annotations (KAAS, GHOSTZ).

Expression

Transcript expression in Pv11 cells

TPM values are indicated as average +/- STDEV.

Differential expression

Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.

Raw TPM values