General information for g11159.t4
Yuki Yoshida
22/1/2022
Gene loci information
Transcript annotation
- This transcript has been annotated as Deoxynucleoside kinase.
Parent gene
- The parent gene g11159 is located on chr_1: 14370495..14371147 (- strand)
Gene structure
- The exon-intron structure of all isoforms are indicated below. CDS regions are colored in green. TSS and TTs that were predicted with CTR-Seq data are indicated in solid circle and squares, respectively. More specific data are shown in the table below.
| Chromosome | Gene | Transcript | Category | ID | Start | End |
|---|---|---|---|---|---|---|
| chr_1 | g11159 | g11159.t4 | TTS | g11159.t4 | 14368486 | 14368486 |
| chr_1 | g11159 | g11159.t4 | isoform | g11159.t4 | 14369365 | 14371147 |
| chr_1 | g11159 | g11159.t4 | exon | g11159.t4.exon1 | 14369365 | 14369773 |
| chr_1 | g11159 | g11159.t4 | exon | g11159.t4.exon2 | 14369884 | 14370513 |
| chr_1 | g11159 | g11159.t4 | cds | g11159.t4.CDS1 | 14369938 | 14370513 |
| chr_1 | g11159 | g11159.t4 | exon | g11159.t4.exon3 | 14370586 | 14371147 |
| chr_1 | g11159 | g11159.t4 | cds | g11159.t4.CDS2 | 14370586 | 14370738 |
| chr_1 | g11159 | g11159.t4 | TSS | g11159.t4 | 14371251 | 14371251 |
Sequences
>g11159.t4 Gene=g11159 Length=1601
ATGGTGGTTTATAATCATGCATTGAGTAAGTAAGAATCAATTACTAAGTGAATTGTTTGA
AAAATTTAAAATTCAAAATATTGTGAAATGAAATTATTTACATCAAAAACAGGGCTGATG
TTAAAATTTTGTTTGACTTTAAATTTTAAAATTTTCCGGCGCGAAAAAAACTTATTTCCC
GCGTTCATTAGATTGTGACTTTTTTTTAATTTTCTATAGAGAAAAATTGATAAAAACTAA
ATTTGACTAGTTTAAATATATTTTAGAACAATTATTTACTATAAAAAAACTAAACAAGCG
CAAAACGATAGAAGATTCATTCAAGTCAGATCAATTTCACAAATATTTCATAATTTTTTT
ATTAGGACGCTTGGTTTCATCTAAATTAATTAACAATTTTACAATCAGAATGGCTTCATT
CTCAGTGAATAAAAAGGCTCCATTTACTGTCTTTGTTGAGGGCAATATAGGAAGTGGAAA
AACGACTTTTCTCAATCATTTTAGTCAATTTCAGAATGTCTGTTTAATGACCGAGCCTGT
TGAACAATGGCGCAATCTTAACGGAGTAAATCTGTTTGACTTGATGTATAAGAATCCAGA
TAGATGGGCTATGACTTTTCAAAACTATGTTACTTTGACTATGCTTAAAAACCACATTAA
GATAACTGACAAGCCTGTTAAACTGATGGAACGATCGATGTACAGTGCTCGTTACTGTTT
CGTTGAGAAAATGCTTGCAAGTGGAATTCTTCAAGAAGGAATGTATCACGTGCTTCAAGA
GTGGTATAATTTTATTCACGAACATCACCAAATTCAATGTGATCTCATTGTCTATTTAAG
AACAAGTCCAGAAGTTGTATATGAACGTATGAAAAAACGTGGAAGAATCGAAGAAAGTGG
TGTCTCATTTCAATATTTAAAAGATTTGCATGAGCTTCATGAAAATTGGCTAATTCATGG
AAAATTTTATCGACCAGCACAAGTGTTAGTACTCGATGCAAATTTAGATTTAGATGGTAT
TGGAGCCGAATATGTTAGATCAGAATCTAGTATATTACGACCTATTGTCATTGAAAATAC
GAATCATCAAATGGGTATCACTGCATCGCCTAGTAAACGTGAACGAGAGTTGTATTGAAA
AAATCAAAGTGCTATCGTCAACATTTTATGCTTTATTATACTTCATACCAGAATTTAGTC
AGCATTTATTGCTTTTTTACAAGTGTTTTCTTGTGTGATTTACATACTTATTTTTGGTAA
TATGAAACGAATATAACAATTCATATTAATCGTAATTAACCAACTTTCTTTTACTATTAC
CTATTAATATTAAGTTCAAACATTTCCAATAAAGTTTGTCTTATGCACTTTTTTGAAATA
ATCAGCAAAAATTAAATTTTAATACATCATCATCACTTAACACTTTAAGAGTTAATGTAT
AAGTAGAATGTAGGACACAATGAGAATAATATTAAAACATTGTTTTTTTTTTCAAAATTA
AAATGTGGATCAAAAAATAAAAGGAAAATCTCAACGGAAAACATTTAAATTGATTTCTTT
TTTCATGCACGTATCACATGTTTACCAAGAATTGTATACAG
>g11159.t4 Gene=g11159 Length=242
MASFSVNKKAPFTVFVEGNIGSGKTTFLNHFSQFQNVCLMTEPVEQWRNLNGVNLFDLMY
KNPDRWAMTFQNYVTLTMLKNHIKITDKPVKLMERSMYSARYCFVEKMLASGILQEGMYH
VLQEWYNFIHEHHQIQCDLIVYLRTSPEVVYERMKKRGRIEESGVSFQYLKDLHELHENW
LIHGKFYRPAQVLVLDANLDLDGIGAEYVRSESSILRPIVIENTNHQMGITASPSKRERE
LY
Protein features from InterProScan
| Transcript | Database | ID | Name | Start | End | E.value | |
|---|---|---|---|---|---|---|---|
| 7 | g11159.t4 | CDD | cd01673 | dNK | 16 | 198 | 0 |
| 5 | g11159.t4 | Gene3D | G3DSA:3.40.50.300 | - | 2 | 200 | 0 |
| 2 | g11159.t4 | PANTHER | PTHR10513:SF24 | THYMIDINE KINASE 2, MITOCHONDRIAL | 7 | 208 | 0 |
| 3 | g11159.t4 | PANTHER | PTHR10513 | DEOXYNUCLEOSIDE KINASE | 7 | 208 | 0 |
| 6 | g11159.t4 | PIRSF | PIRSF000705 | DNK | 2 | 227 | 0 |
| 1 | g11159.t4 | Pfam | PF01712 | Deoxynucleoside kinase | 15 | 201 | 0 |
| 4 | g11159.t4 | SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 9 | 204 | 0 |
Transmembrane regions from TMHMM
Disordered region
IUPRED3 score over 0.5 is predictive of a disordered region.
GO terms from InterProScan
| GOID | TERM | ONTOLOGY |
|---|---|---|
| GO:0019136 | deoxynucleoside kinase activity | MF |
| GO:0005524 | ATP binding | MF |
| GO:0006139 | nucleobase-containing compound metabolic process | BP |
KEGG
Orthology
- This transcript has been annotated with K05961 (deoxynucleoside kinase)
Pathway
- This transcript belongs to the following pathways
Expression
Transcript expression in Pv11 cells
TPM values are indicated as average +/- STDEV. 
Differential expression
Differentially expressed genes were identified with DESeq2 using the ‘run_DE_analysis.pl’ script from Trinity. Transcripts were determined as differentially expressed when (1) FDR < 0.05 (2) fold change > 2 (TPM calculated by RSEM). DE information and fold change between conditions are indicated in the plot below.
